Gene : Glyma.19G090900 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  909
Name:  ? Glyma.19G090900 Secondary Identifier:  ? PAC:30513176
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G090900 0.5kb upstream 0.5kb upstream 1777 true Chr19: 32327760-32329536 Glycine max
Glyma.19G090900 0.5kb upstream 0.5kb upstream 500 false Chr19: 32327760-32328259 Glycine max
Glyma.19G090900 0.5kb downstream 0.5kb downstream 1777 true Chr19: 32328260-32330036 Glycine max
Glyma.19G090900 0.5kb downstream 0.5kb downstream 500 false Chr19: 32329537-32330036 Glycine max
Glyma.19G090900 1.0kb upstream 1.0kb upstream 2277 true Chr19: 32327260-32329536 Glycine max
Glyma.19G090900 1.0kb upstream 1.0kb upstream 1000 false Chr19: 32327260-32328259 Glycine max
Glyma.19G090900 1.0kb downstream 1.0kb downstream 2277 true Chr19: 32328260-32330536 Glycine max
Glyma.19G090900 1.0kb downstream 1.0kb downstream 1000 false Chr19: 32329537-32330536 Glycine max
Glyma.19G090900 2.0kb upstream 2.0kb upstream 3277 true Chr19: 32326260-32329536 Glycine max
Glyma.19G090900 2.0kb upstream 2.0kb upstream 2000 false Chr19: 32326260-32328259 Glycine max
Glyma.19G090900 2.0kb downstream 2.0kb downstream 3277 true Chr19: 32328260-32331536 Glycine max
Glyma.19G090900 2.0kb downstream 2.0kb downstream 2000 false Chr19: 32329537-32331536 Glycine max
Glyma.19G090900 5.0kb upstream 5.0kb upstream 6277 true Chr19: 32323260-32329536 Glycine max
Glyma.19G090900 5.0kb upstream 5.0kb upstream 5000 false Chr19: 32323260-32328259 Glycine max
Glyma.19G090900 5.0kb downstream 5.0kb downstream 6277 true Chr19: 32328260-32334536 Glycine max
Glyma.19G090900 5.0kb downstream 5.0kb downstream 5000 false Chr19: 32329537-32334536 Glycine max
Glyma.19G090900 10.0kb upstream 10.0kb upstream 11277 true Chr19: 32318260-32329536 Glycine max
Glyma.19G090900 10.0kb upstream 10.0kb upstream 10000 false Chr19: 32318260-32328259 Glycine max
Glyma.19G090900 10.0kb downstream 10.0kb downstream 11277 true Chr19: 32328260-32339536 Glycine max
Glyma.19G090900 10.0kb downstream 10.0kb downstream 10000 false Chr19: 32329537-32339536 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027219 5273 Angiosperm View MSA
122296354 5265 Fabidae View MSA
124037694 5270 Rosid View MSA
123745654 5271 Pentapetalae View MSA
122794629 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.579062 0.0 2.15926   High
cufflinks 0.357313 0.0 1.36338    
cufflinks 0.299142 0.0 1.15025    
cufflinks 0.370527 0.0 1.41135    
cufflinks 0.425585 0.0 1.60822    
cufflinks 0.157512 0.0 0.620611 Low Low
cufflinks 0.276839 0.0 1.06582    
cufflinks 0.258653 0.0 1.00076    
cufflinks 0.289339 0.0 1.11292    
cufflinks 0.159       Low
cufflinks 0.339        
cufflinks 0.614       High
cufflinks 0.638       High
cufflinks 0.637       High
cufflinks 0.535        
cufflinks 0.309        
cufflinks 0.27        
cufflinks 0.406        
cufflinks 0.664       High
cufflinks 0.312        
cufflinks 0.23       Low
cufflinks 0.266        
cufflinks 0.44        
cufflinks 0.326        
cufflinks 0.303        
cufflinks 0.382        

0 Strain