Gene : Glyma.03G109000 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR22594:SF20 - LYSINE--TRNA LIGASE Genomic Order:  1090
Name:  ? Glyma.03G109000 Secondary Identifier:  ? PAC:30516468
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G109000 0.5kb upstream 0.5kb upstream 10724 true Chr03: 30950848-30961571 Glycine max
Glyma.03G109000 0.5kb upstream 0.5kb upstream 500 false Chr03: 30961072-30961571 Glycine max
Glyma.03G109000 0.5kb downstream 0.5kb downstream 10724 true Chr03: 30950348-30961071 Glycine max
Glyma.03G109000 0.5kb downstream 0.5kb downstream 500 false Chr03: 30950348-30950847 Glycine max
Glyma.03G109000 1.0kb upstream 1.0kb upstream 11224 true Chr03: 30950848-30962071 Glycine max
Glyma.03G109000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 30961072-30962071 Glycine max
Glyma.03G109000 1.0kb downstream 1.0kb downstream 11224 true Chr03: 30949848-30961071 Glycine max
Glyma.03G109000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 30949848-30950847 Glycine max
Glyma.03G109000 2.0kb upstream 2.0kb upstream 12224 true Chr03: 30950848-30963071 Glycine max
Glyma.03G109000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 30961072-30963071 Glycine max
Glyma.03G109000 2.0kb downstream 2.0kb downstream 12224 true Chr03: 30948848-30961071 Glycine max
Glyma.03G109000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 30948848-30950847 Glycine max
Glyma.03G109000 5.0kb upstream 5.0kb upstream 15224 true Chr03: 30950848-30966071 Glycine max
Glyma.03G109000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 30961072-30966071 Glycine max
Glyma.03G109000 5.0kb downstream 5.0kb downstream 15224 true Chr03: 30945848-30961071 Glycine max
Glyma.03G109000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 30945848-30950847 Glycine max
Glyma.03G109000 10.0kb upstream 10.0kb upstream 20224 true Chr03: 30950848-30971071 Glycine max
Glyma.03G109000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 30961072-30971071 Glycine max
Glyma.03G109000 10.0kb downstream 10.0kb downstream 20224 true Chr03: 30940848-30961071 Glycine max
Glyma.03G109000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 30940848-30950847 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305134 5265 Fabidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.4719 0.0 49.6871   High
cufflinks 10.0752 0.0 35.288    
cufflinks 5.46419 0.0 20.9516   Low
cufflinks 6.08572 0.0 22.8003    
cufflinks 9.65801 0.0 33.9502    
cufflinks 5.98628 0.0 19.5775    
cufflinks 8.10778 0.0 29.3145    
cufflinks 6.90733 0.0 25.4081    
cufflinks 7.53948 0.0 27.7321    
cufflinks 0.827        
cufflinks 0.26       Low
cufflinks 0.745        
cufflinks 1.259        
cufflinks 1.515        
cufflinks 0.274       Low
cufflinks 2.368       High
cufflinks 0.344       Low
cufflinks 0.872        
cufflinks 1.138        
cufflinks 2.169       High
cufflinks 0.331       Low
cufflinks 1.947       High
cufflinks 2.017       High
cufflinks 0.312       Low
cufflinks 2.168       High
cufflinks 0.467        

0 Strain