Gene : Glyma.19G094000 G. max Wm82.a2.v1

Defline:  (1 of 6) PTHR31251:SF20 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED Genomic Order:  940
Name:  ? Glyma.19G094000 Secondary Identifier:  ? PAC:30513179

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G094000 0.5kb upstream 0.5kb upstream 4160 true Chr19: 33201223-33205382 Glycine max
Glyma.19G094000 0.5kb upstream 0.5kb upstream 500 false Chr19: 33204883-33205382 Glycine max
Glyma.19G094000 0.5kb downstream 0.5kb downstream 4160 true Chr19: 33200723-33204882 Glycine max
Glyma.19G094000 0.5kb downstream 0.5kb downstream 500 false Chr19: 33200723-33201222 Glycine max
Glyma.19G094000 1.0kb upstream 1.0kb upstream 4660 true Chr19: 33201223-33205882 Glycine max
Glyma.19G094000 1.0kb upstream 1.0kb upstream 1000 false Chr19: 33204883-33205882 Glycine max
Glyma.19G094000 1.0kb downstream 1.0kb downstream 4660 true Chr19: 33200223-33204882 Glycine max
Glyma.19G094000 1.0kb downstream 1.0kb downstream 1000 false Chr19: 33200223-33201222 Glycine max
Glyma.19G094000 2.0kb upstream 2.0kb upstream 5660 true Chr19: 33201223-33206882 Glycine max
Glyma.19G094000 2.0kb upstream 2.0kb upstream 2000 false Chr19: 33204883-33206882 Glycine max
Glyma.19G094000 2.0kb downstream 2.0kb downstream 5660 true Chr19: 33199223-33204882 Glycine max
Glyma.19G094000 2.0kb downstream 2.0kb downstream 2000 false Chr19: 33199223-33201222 Glycine max
Glyma.19G094000 5.0kb upstream 5.0kb upstream 8660 true Chr19: 33201223-33209882 Glycine max
Glyma.19G094000 5.0kb upstream 5.0kb upstream 5000 false Chr19: 33204883-33209882 Glycine max
Glyma.19G094000 5.0kb downstream 5.0kb downstream 8660 true Chr19: 33196223-33204882 Glycine max
Glyma.19G094000 5.0kb downstream 5.0kb downstream 5000 false Chr19: 33196223-33201222 Glycine max
Glyma.19G094000 10.0kb upstream 10.0kb upstream 13660 true Chr19: 33201223-33214882 Glycine max
Glyma.19G094000 10.0kb upstream 10.0kb upstream 10000 false Chr19: 33204883-33214882 Glycine max
Glyma.19G094000 10.0kb downstream 10.0kb downstream 13660 true Chr19: 33191223-33204882 Glycine max
Glyma.19G094000 10.0kb downstream 10.0kb downstream 10000 false Chr19: 33191223-33201222 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779477 5273 Angiosperm View MSA
122309811 5265 Fabidae View MSA
124070994 5270 Rosid View MSA
123743013 5271 Pentapetalae View MSA
122770483 5272 Eudicot View MSA
123428908 5275 Viridiplantae View MSA
121051136 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.66235 0.0 21.7165    
cufflinks 8.77148 0.0 30.6708    
cufflinks 16.4406 0.0 54.9837   High
cufflinks 6.12074 0.0 22.6985    
cufflinks 4.77926 0.0 18.8089    
cufflinks 5.27355 0.0 17.9167    
cufflinks 0.800122 0.0 4.45883   Low
cufflinks 5.01728 0.0 19.4284    
cufflinks 4.75108 0.0 18.7466    
cufflinks 2.19        
cufflinks 5.475        
cufflinks 5.037        
cufflinks 1.656       Low
cufflinks 1.415       Low
cufflinks 1.389       Low
cufflinks 4.72        
cufflinks 1.582       Low
cufflinks 3.283        
cufflinks 3.146        
cufflinks 5.151        
cufflinks 7.86     High High
cufflinks 4.665        
cufflinks 3.935        
cufflinks 4.203        
cufflinks 3.987        
cufflinks 5.582        

0 Strain