Gene : Glyma.04G095000 G. max Wm82.a2.v1
Defline:  (1 of 6) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  950
Name:  ? Glyma.04G095000 Secondary Identifier:  ? PAC:30489636
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G095000 0.5kb upstream 0.5kb upstream 1211 true Chr04: 8469624-8470834 Glycine max
Glyma.04G095000 0.5kb upstream 0.5kb upstream 500 false Chr04: 8469624-8470123 Glycine max
Glyma.04G095000 0.5kb downstream 0.5kb downstream 1211 true Chr04: 8470124-8471334 Glycine max
Glyma.04G095000 0.5kb downstream 0.5kb downstream 500 false Chr04: 8470835-8471334 Glycine max
Glyma.04G095000 1.0kb upstream 1.0kb upstream 1711 true Chr04: 8469124-8470834 Glycine max
Glyma.04G095000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 8469124-8470123 Glycine max
Glyma.04G095000 1.0kb downstream 1.0kb downstream 1711 true Chr04: 8470124-8471834 Glycine max
Glyma.04G095000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 8470835-8471834 Glycine max
Glyma.04G095000 2.0kb upstream 2.0kb upstream 2711 true Chr04: 8468124-8470834 Glycine max
Glyma.04G095000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 8468124-8470123 Glycine max
Glyma.04G095000 2.0kb downstream 2.0kb downstream 2711 true Chr04: 8470124-8472834 Glycine max
Glyma.04G095000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 8470835-8472834 Glycine max
Glyma.04G095000 5.0kb upstream 5.0kb upstream 5711 true Chr04: 8465124-8470834 Glycine max
Glyma.04G095000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 8465124-8470123 Glycine max
Glyma.04G095000 5.0kb downstream 5.0kb downstream 5711 true Chr04: 8470124-8475834 Glycine max
Glyma.04G095000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 8470835-8475834 Glycine max
Glyma.04G095000 10.0kb upstream 10.0kb upstream 10711 true Chr04: 8460124-8470834 Glycine max
Glyma.04G095000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 8460124-8470123 Glycine max
Glyma.04G095000 10.0kb downstream 10.0kb downstream 10711 true Chr04: 8470124-8480834 Glycine max
Glyma.04G095000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 8470835-8480834 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248867 5265 Fabidae Singleton cluster - no MSA
124039428 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2252 0.0 45.0254   High
cufflinks 4.37271 0.0 15.1865    
cufflinks 1.803 0.0 6.64843    
cufflinks 35.2297 0.0 95.6155 High High
cufflinks 0.889422 0.0 3.39397   Low
cufflinks 1.28485 0.0 4.82082    
cufflinks 12.3585 0.0 37.6935    
cufflinks 2.50257 0.0 9.06747    
cufflinks 0.899435 0.0 3.4277   Low
cufflinks 3.33        
cufflinks 0.025     Low Low
cufflinks 1.62        
cufflinks 0.094     Low  
cufflinks 0.051     Low  
cufflinks 0.026     Low Low
cufflinks 6.546        
cufflinks 0.026     Low Low
cufflinks 1.679        
cufflinks 3.235        
cufflinks 7.951     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.285     High High
cufflinks 9.456     High High
cufflinks 0.029     Low Low
cufflinks 7.83     High High
cufflinks 0.02     Low Low

0 Strain