Gene : Glyma.04G088000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR14217:SF3 - INOSITOL-TETRAKISPHOSPHATE 1-KINASE 2-RELATED Genomic Order:  880
Name:  ? Glyma.04G088000 Secondary Identifier:  ? PAC:30489299
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6365 Glycine max pathologic  
Gmax PWY-6366 Glycine max pathologic  
Gmax PWY-6554 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G088000 0.5kb upstream 0.5kb upstream 5965 true Chr04: 7528445-7534409 Glycine max
Glyma.04G088000 0.5kb upstream 0.5kb upstream 500 false Chr04: 7533910-7534409 Glycine max
Glyma.04G088000 0.5kb downstream 0.5kb downstream 5965 true Chr04: 7527945-7533909 Glycine max
Glyma.04G088000 0.5kb downstream 0.5kb downstream 500 false Chr04: 7527945-7528444 Glycine max
Glyma.04G088000 1.0kb upstream 1.0kb upstream 6465 true Chr04: 7528445-7534909 Glycine max
Glyma.04G088000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7533910-7534909 Glycine max
Glyma.04G088000 1.0kb downstream 1.0kb downstream 6465 true Chr04: 7527445-7533909 Glycine max
Glyma.04G088000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7527445-7528444 Glycine max
Glyma.04G088000 2.0kb upstream 2.0kb upstream 7465 true Chr04: 7528445-7535909 Glycine max
Glyma.04G088000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7533910-7535909 Glycine max
Glyma.04G088000 2.0kb downstream 2.0kb downstream 7465 true Chr04: 7526445-7533909 Glycine max
Glyma.04G088000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7526445-7528444 Glycine max
Glyma.04G088000 5.0kb upstream 5.0kb upstream 10465 true Chr04: 7528445-7538909 Glycine max
Glyma.04G088000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7533910-7538909 Glycine max
Glyma.04G088000 5.0kb downstream 5.0kb downstream 10465 true Chr04: 7523445-7533909 Glycine max
Glyma.04G088000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7523445-7528444 Glycine max
Glyma.04G088000 10.0kb upstream 10.0kb upstream 15465 true Chr04: 7528445-7543909 Glycine max
Glyma.04G088000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7533910-7543909 Glycine max
Glyma.04G088000 10.0kb downstream 10.0kb downstream 15465 true Chr04: 7518445-7533909 Glycine max
Glyma.04G088000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7518445-7528444 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041123 5273 Angiosperm View MSA
122308834 5265 Fabidae View MSA
124060852 5270 Rosid View MSA
123745462 5271 Pentapetalae View MSA
122790071 5272 Eudicot View MSA
121347833 5274 Embryophyte View MSA
123428803 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.5654 0.0 45.4111    
cufflinks 13.5724 0.0 49.9992    
cufflinks 17.4476 0.0 62.8681    
cufflinks 16.0855 0.0 59.8022    
cufflinks 13.8752 0.0 50.0623    
cufflinks 3.71209 0.0 11.3336   Low
cufflinks 10.3833 0.0 39.7614    
cufflinks 12.5735 0.0 46.2054    
cufflinks 19.0861 0.0 68.0441    
cufflinks 4.521        
cufflinks 2.309        
cufflinks 4.947        
cufflinks 1.262       Low
cufflinks 1.148       Low
cufflinks 26.69     High High
cufflinks 3.781        
cufflinks 1.397       Low
cufflinks 6.536        
cufflinks 2.908        
cufflinks 4.481        
cufflinks 1.824        
cufflinks 4.342        
cufflinks 4.132        
cufflinks 1.548        
cufflinks 4.785        
cufflinks 1.977        

0 Strain