Gene : Glyma.19G133600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23201//PTHR23201:SF8 - EXTENSIN, PROLINE-RICH PROTEIN Genomic Order:  1336
Name:  ? Glyma.19G133600 Secondary Identifier:  ? PAC:30514575
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G133600 0.5kb upstream 0.5kb upstream 3122 true Chr19: 39470881-39474002 Glycine max
Glyma.19G133600 0.5kb upstream 0.5kb upstream 500 false Chr19: 39473503-39474002 Glycine max
Glyma.19G133600 0.5kb downstream 0.5kb downstream 3122 true Chr19: 39470381-39473502 Glycine max
Glyma.19G133600 0.5kb downstream 0.5kb downstream 500 false Chr19: 39470381-39470880 Glycine max
Glyma.19G133600 1.0kb upstream 1.0kb upstream 3622 true Chr19: 39470881-39474502 Glycine max
Glyma.19G133600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 39473503-39474502 Glycine max
Glyma.19G133600 1.0kb downstream 1.0kb downstream 3622 true Chr19: 39469881-39473502 Glycine max
Glyma.19G133600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 39469881-39470880 Glycine max
Glyma.19G133600 2.0kb upstream 2.0kb upstream 4622 true Chr19: 39470881-39475502 Glycine max
Glyma.19G133600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 39473503-39475502 Glycine max
Glyma.19G133600 2.0kb downstream 2.0kb downstream 4622 true Chr19: 39468881-39473502 Glycine max
Glyma.19G133600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 39468881-39470880 Glycine max
Glyma.19G133600 5.0kb upstream 5.0kb upstream 7622 true Chr19: 39470881-39478502 Glycine max
Glyma.19G133600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 39473503-39478502 Glycine max
Glyma.19G133600 5.0kb downstream 5.0kb downstream 7622 true Chr19: 39465881-39473502 Glycine max
Glyma.19G133600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 39465881-39470880 Glycine max
Glyma.19G133600 10.0kb upstream 10.0kb upstream 12622 true Chr19: 39470881-39483502 Glycine max
Glyma.19G133600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 39473503-39483502 Glycine max
Glyma.19G133600 10.0kb downstream 10.0kb downstream 12622 true Chr19: 39460881-39473502 Glycine max
Glyma.19G133600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 39460881-39470880 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304512 5265 Fabidae View MSA
124069582 5270 Rosid View MSA
123752288 5271 Pentapetalae View MSA
122795520 5272 Eudicot View MSA
122051034 5273 Angiosperm View MSA
121312257 5274 Embryophyte View MSA
123349447 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.198898 0.0 0.785118 Low Low
cufflinks 4.22868 0.0 20.5126    
cufflinks 1.67311 0.0 9.66582    
cufflinks 16.6214 0.0 59.9957    
cufflinks 0.424702 0.0 2.11324    
cufflinks 1.61749 0.0 9.32223    
cufflinks 72.6668 0.0 270.242 High High
cufflinks 0.771544 0.0 3.81248    
cufflinks 6.69485 0.0 26.3669    
cufflinks 0.043     Low  
cufflinks 0.008     Low Low
cufflinks 0.735       High
cufflinks 0.015     Low  
cufflinks 0.084        
cufflinks 0.058        
cufflinks 0.069     Low  
cufflinks 0.079        
cufflinks 1.513       High
cufflinks 1.571       High
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044     Low  
cufflinks 0.084     Low  
cufflinks 0.004     Low Low
cufflinks 0.068     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain