Gene : Glyma.04G117800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR30560//PTHR30560:SF4 - TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE Genomic Order:  1178
Name:  ? Glyma.04G117800 Secondary Identifier:  ? PAC:30487479
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G117800 0.5kb upstream 0.5kb upstream 7220 true Chr04: 13823885-13831104 Glycine max
Glyma.04G117800 0.5kb upstream 0.5kb upstream 500 false Chr04: 13830605-13831104 Glycine max
Glyma.04G117800 0.5kb downstream 0.5kb downstream 7220 true Chr04: 13823385-13830604 Glycine max
Glyma.04G117800 0.5kb downstream 0.5kb downstream 500 false Chr04: 13823385-13823884 Glycine max
Glyma.04G117800 1.0kb upstream 1.0kb upstream 7720 true Chr04: 13823885-13831604 Glycine max
Glyma.04G117800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 13830605-13831604 Glycine max
Glyma.04G117800 1.0kb downstream 1.0kb downstream 7720 true Chr04: 13822885-13830604 Glycine max
Glyma.04G117800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 13822885-13823884 Glycine max
Glyma.04G117800 2.0kb upstream 2.0kb upstream 8720 true Chr04: 13823885-13832604 Glycine max
Glyma.04G117800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 13830605-13832604 Glycine max
Glyma.04G117800 2.0kb downstream 2.0kb downstream 8720 true Chr04: 13821885-13830604 Glycine max
Glyma.04G117800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 13821885-13823884 Glycine max
Glyma.04G117800 5.0kb upstream 5.0kb upstream 11720 true Chr04: 13823885-13835604 Glycine max
Glyma.04G117800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 13830605-13835604 Glycine max
Glyma.04G117800 5.0kb downstream 5.0kb downstream 11720 true Chr04: 13818885-13830604 Glycine max
Glyma.04G117800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 13818885-13823884 Glycine max
Glyma.04G117800 10.0kb upstream 10.0kb upstream 16720 true Chr04: 13823885-13840604 Glycine max
Glyma.04G117800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 13830605-13840604 Glycine max
Glyma.04G117800 10.0kb downstream 10.0kb downstream 16720 true Chr04: 13813885-13830604 Glycine max
Glyma.04G117800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 13813885-13823884 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309964 5265 Fabidae View MSA
124073258 5270 Rosid View MSA
123748719 5271 Pentapetalae View MSA
122795151 5272 Eudicot View MSA
122048682 5273 Angiosperm View MSA
121348209 5274 Embryophyte View MSA
123380773 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.0916 0.0 69.0431   High
cufflinks 12.9094 0.0 54.6323   High
cufflinks 7.24138 0.0 39.009    
cufflinks 5.19184 0.0 28.7927    
cufflinks 4.10829 0.0 28.0052    
cufflinks 3.17289 0.0 20.571    
cufflinks 3.0205 0.0 19.9065   Low
cufflinks 6.10424 0.0 31.4225    
cufflinks 3.48232 0.0 19.7572    
cufflinks 0.196        
cufflinks 0.146        
cufflinks 0.328        
cufflinks 0.071     Low Low
cufflinks 0.089        
cufflinks 0.093        
cufflinks 0.983       High
cufflinks 0.058     Low Low
cufflinks 0.273        
cufflinks 0.425        
cufflinks 1.074       High
cufflinks 0.1        
cufflinks 0.997       High
cufflinks 0.924       High
cufflinks 0.115        
cufflinks 1.15       High
cufflinks 0.069       Low

0 Strain