Gene : Glyma.04G110300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  1103
Name:  ? Glyma.04G110300 Secondary Identifier:  ? PAC:30487625
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7409 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G110300 0.5kb upstream 0.5kb upstream 12994 true Chr04: 12159223-12172216 Glycine max
Glyma.04G110300 0.5kb upstream 0.5kb upstream 500 false Chr04: 12159223-12159722 Glycine max
Glyma.04G110300 0.5kb downstream 0.5kb downstream 12994 true Chr04: 12159723-12172716 Glycine max
Glyma.04G110300 0.5kb downstream 0.5kb downstream 500 false Chr04: 12172217-12172716 Glycine max
Glyma.04G110300 1.0kb upstream 1.0kb upstream 13494 true Chr04: 12158723-12172216 Glycine max
Glyma.04G110300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 12158723-12159722 Glycine max
Glyma.04G110300 1.0kb downstream 1.0kb downstream 13494 true Chr04: 12159723-12173216 Glycine max
Glyma.04G110300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 12172217-12173216 Glycine max
Glyma.04G110300 2.0kb upstream 2.0kb upstream 14494 true Chr04: 12157723-12172216 Glycine max
Glyma.04G110300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 12157723-12159722 Glycine max
Glyma.04G110300 2.0kb downstream 2.0kb downstream 14494 true Chr04: 12159723-12174216 Glycine max
Glyma.04G110300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 12172217-12174216 Glycine max
Glyma.04G110300 5.0kb upstream 5.0kb upstream 17494 true Chr04: 12154723-12172216 Glycine max
Glyma.04G110300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 12154723-12159722 Glycine max
Glyma.04G110300 5.0kb downstream 5.0kb downstream 17494 true Chr04: 12159723-12177216 Glycine max
Glyma.04G110300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 12172217-12177216 Glycine max
Glyma.04G110300 10.0kb upstream 10.0kb upstream 22494 true Chr04: 12149723-12172216 Glycine max
Glyma.04G110300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 12149723-12159722 Glycine max
Glyma.04G110300 10.0kb downstream 10.0kb downstream 22494 true Chr04: 12159723-12182216 Glycine max
Glyma.04G110300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 12172217-12182216 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300579 5265 Fabidae View MSA
124067594 5270 Rosid View MSA
123739367 5271 Pentapetalae View MSA
122793263 5272 Eudicot View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.43304 0.0 12.0977    
cufflinks 2.78065 0.0 13.2374   High
cufflinks 2.74851 0.0 13.1149   High
cufflinks 2.33925 0.0 15.2761    
cufflinks 2.41243 0.0 12.0031    
cufflinks 1.66211 0.0 11.0863   Low
cufflinks 1.87648 0.0 12.2797   Low
cufflinks 2.35761 0.0 11.771    
cufflinks 2.1507 0.0 11.0269    
cufflinks 0.078     Low  
cufflinks 0.041     Low Low
cufflinks 0.094     Low  
cufflinks 0.098        
cufflinks 0.124       High
cufflinks 0.057        
cufflinks 0.08     Low  
cufflinks 0.05     Low Low
cufflinks 0.089     Low  
cufflinks 0.117       High
cufflinks 0.109       High
cufflinks 0.052     Low Low
cufflinks 0.077     Low  
cufflinks 0.1     Low  
cufflinks 0.051     Low Low
cufflinks 0.092     Low  
cufflinks 0.057     Low  

0 Strain