Gene : Glyma.04G171400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11831//PTHR11831:SF13 - 30S 40S RIBOSOMAL PROTEIN Genomic Order:  1714
Name:  ? Glyma.04G171400 Secondary Identifier:  ? PAC:30488357
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G171400 0.5kb upstream 0.5kb upstream 2655 true Chr04: 42831926-42834580 Glycine max
Glyma.04G171400 0.5kb upstream 0.5kb upstream 500 false Chr04: 42831926-42832425 Glycine max
Glyma.04G171400 0.5kb downstream 0.5kb downstream 2655 true Chr04: 42832426-42835080 Glycine max
Glyma.04G171400 0.5kb downstream 0.5kb downstream 500 false Chr04: 42834581-42835080 Glycine max
Glyma.04G171400 1.0kb upstream 1.0kb upstream 3155 true Chr04: 42831426-42834580 Glycine max
Glyma.04G171400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 42831426-42832425 Glycine max
Glyma.04G171400 1.0kb downstream 1.0kb downstream 3155 true Chr04: 42832426-42835580 Glycine max
Glyma.04G171400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 42834581-42835580 Glycine max
Glyma.04G171400 2.0kb upstream 2.0kb upstream 4155 true Chr04: 42830426-42834580 Glycine max
Glyma.04G171400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 42830426-42832425 Glycine max
Glyma.04G171400 2.0kb downstream 2.0kb downstream 4155 true Chr04: 42832426-42836580 Glycine max
Glyma.04G171400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 42834581-42836580 Glycine max
Glyma.04G171400 5.0kb upstream 5.0kb upstream 7155 true Chr04: 42827426-42834580 Glycine max
Glyma.04G171400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 42827426-42832425 Glycine max
Glyma.04G171400 5.0kb downstream 5.0kb downstream 7155 true Chr04: 42832426-42839580 Glycine max
Glyma.04G171400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 42834581-42839580 Glycine max
Glyma.04G171400 10.0kb upstream 10.0kb upstream 12155 true Chr04: 42822426-42834580 Glycine max
Glyma.04G171400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 42822426-42832425 Glycine max
Glyma.04G171400 10.0kb downstream 10.0kb downstream 12155 true Chr04: 42832426-42844580 Glycine max
Glyma.04G171400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 42834581-42844580 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253803 5265 Fabidae View MSA
124071399 5270 Rosid View MSA
123748066 5271 Pentapetalae View MSA
122790013 5272 Eudicot View MSA
122042868 5273 Angiosperm View MSA
121345250 5274 Embryophyte View MSA
123426931 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 100.872 0.0 431.728 High  
cufflinks 98.5923 0.0 413.489 High  
cufflinks 46.8808 0.0 167.28 High Low
cufflinks 68.4011 0.0 262.42 High  
cufflinks 163.37 0.0 736.207 High  
cufflinks 133.406 0.0 542.677 High  
cufflinks 223.427 0.0 1150.83 High High
cufflinks 110.181 0.0 484.362 High  
cufflinks 108.99 0.0 478.424 High  
cufflinks 18.329     High  
cufflinks 6.291     High Low
cufflinks 13.613     High  
cufflinks 38.286     High High
cufflinks 56.759     High High
cufflinks 6.672     High Low
cufflinks 15.905     High  
cufflinks 12.15     High  
cufflinks 13.303     High  
cufflinks 21.503     High  
cufflinks 11.269     High  
cufflinks 10.628     High  
cufflinks 12.496     High  
cufflinks 17.808     High  
cufflinks 8.046     High Low
cufflinks 13.743     High  
cufflinks 11.867     High  

0 Strain