Gene : Glyma.04G179800 G. max Wm82.a2.v1
Defline:  (1 of 18) KOG1700 - Regulatory protein MLP and related LIM proteins Genomic Order:  1798
Name:  ? Glyma.04G179800 Secondary Identifier:  ? PAC:30490798
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G179800 0.5kb upstream 0.5kb upstream 4520 true Chr04: 44476147-44480666 Glycine max
Glyma.04G179800 0.5kb upstream 0.5kb upstream 500 false Chr04: 44476147-44476646 Glycine max
Glyma.04G179800 0.5kb downstream 0.5kb downstream 4520 true Chr04: 44476647-44481166 Glycine max
Glyma.04G179800 0.5kb downstream 0.5kb downstream 500 false Chr04: 44480667-44481166 Glycine max
Glyma.04G179800 1.0kb upstream 1.0kb upstream 5020 true Chr04: 44475647-44480666 Glycine max
Glyma.04G179800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 44475647-44476646 Glycine max
Glyma.04G179800 1.0kb downstream 1.0kb downstream 5020 true Chr04: 44476647-44481666 Glycine max
Glyma.04G179800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 44480667-44481666 Glycine max
Glyma.04G179800 2.0kb upstream 2.0kb upstream 6020 true Chr04: 44474647-44480666 Glycine max
Glyma.04G179800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 44474647-44476646 Glycine max
Glyma.04G179800 2.0kb downstream 2.0kb downstream 6020 true Chr04: 44476647-44482666 Glycine max
Glyma.04G179800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 44480667-44482666 Glycine max
Glyma.04G179800 5.0kb upstream 5.0kb upstream 9020 true Chr04: 44471647-44480666 Glycine max
Glyma.04G179800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 44471647-44476646 Glycine max
Glyma.04G179800 5.0kb downstream 5.0kb downstream 9020 true Chr04: 44476647-44485666 Glycine max
Glyma.04G179800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 44480667-44485666 Glycine max
Glyma.04G179800 10.0kb upstream 10.0kb upstream 14020 true Chr04: 44466647-44480666 Glycine max
Glyma.04G179800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 44466647-44476646 Glycine max
Glyma.04G179800 10.0kb downstream 10.0kb downstream 14020 true Chr04: 44476647-44490666 Glycine max
Glyma.04G179800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 44480667-44490666 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238918 5265 Fabidae Singleton cluster - no MSA
123984249 5270 Rosid Singleton cluster - no MSA
123745629 5271 Pentapetalae View MSA
122793915 5272 Eudicot View MSA
122049992 5273 Angiosperm View MSA
121348284 5274 Embryophyte View MSA
123426269 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.13889 0.0 12.1737    
cufflinks 1.51063 0.0 9.16217   Low
cufflinks 1.6989 0.0 7.29305   Low
cufflinks 6.67035 0.0 25.9916    
cufflinks 10.5108 0.0 41.7292    
cufflinks 9.10509 0.0 32.2713    
cufflinks 37.1644 0.0 129.492 High High
cufflinks 13.3108 0.0 49.5853    
cufflinks 7.5422 0.0 28.3703    
cufflinks 1.128        
cufflinks 0.478        
cufflinks 0.419        
cufflinks 2.095       High
cufflinks 2.527       High
cufflinks 0.509        
cufflinks 0.106       Low
cufflinks 0.474        
cufflinks 0.337        
cufflinks 0.283        
cufflinks 0.169        
cufflinks 1.398       High
cufflinks 0.105       Low
cufflinks 0.082     Low Low
cufflinks 0.763        
cufflinks 0.125       Low
cufflinks 0.915        

0 Strain