Gene : Glyma.19G125600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10145 - TRANSCRIPTION ELONGATION FACTOR SPT6 Genomic Order:  1256
Name:  ? Glyma.19G125600 Secondary Identifier:  ? PAC:30512653
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G125600 0.5kb upstream 0.5kb upstream 10250 true Chr19: 38382184-38392433 Glycine max
Glyma.19G125600 0.5kb upstream 0.5kb upstream 500 false Chr19: 38391934-38392433 Glycine max
Glyma.19G125600 0.5kb downstream 0.5kb downstream 10250 true Chr19: 38381684-38391933 Glycine max
Glyma.19G125600 0.5kb downstream 0.5kb downstream 500 false Chr19: 38381684-38382183 Glycine max
Glyma.19G125600 1.0kb upstream 1.0kb upstream 10750 true Chr19: 38382184-38392933 Glycine max
Glyma.19G125600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 38391934-38392933 Glycine max
Glyma.19G125600 1.0kb downstream 1.0kb downstream 10750 true Chr19: 38381184-38391933 Glycine max
Glyma.19G125600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 38381184-38382183 Glycine max
Glyma.19G125600 2.0kb upstream 2.0kb upstream 11750 true Chr19: 38382184-38393933 Glycine max
Glyma.19G125600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 38391934-38393933 Glycine max
Glyma.19G125600 2.0kb downstream 2.0kb downstream 11750 true Chr19: 38380184-38391933 Glycine max
Glyma.19G125600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 38380184-38382183 Glycine max
Glyma.19G125600 5.0kb upstream 5.0kb upstream 14750 true Chr19: 38382184-38396933 Glycine max
Glyma.19G125600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 38391934-38396933 Glycine max
Glyma.19G125600 5.0kb downstream 5.0kb downstream 14750 true Chr19: 38377184-38391933 Glycine max
Glyma.19G125600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 38377184-38382183 Glycine max
Glyma.19G125600 10.0kb upstream 10.0kb upstream 19750 true Chr19: 38382184-38401933 Glycine max
Glyma.19G125600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 38391934-38401933 Glycine max
Glyma.19G125600 10.0kb downstream 10.0kb downstream 19750 true Chr19: 38372184-38391933 Glycine max
Glyma.19G125600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 38372184-38382183 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307042 5265 Fabidae View MSA
124072790 5270 Rosid View MSA
123737056 5271 Pentapetalae View MSA
122788563 5272 Eudicot View MSA
122044627 5273 Angiosperm View MSA
121347900 5274 Embryophyte View MSA
123426736 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.14737 0.0 42.2336    
cufflinks 10.7645 0.0 50.8574    
cufflinks 12.886 0.0 65.0105    
cufflinks 9.57347 0.0 44.5226    
cufflinks 7.83771 0.0 31.5512    
cufflinks 4.75027 0.0 18.1907   Low
cufflinks 20.4984 0.0 111.648   High
cufflinks 6.98885 0.0 27.754    
cufflinks 9.27703 0.0 37.429    
cufflinks 1.237        
cufflinks 1.255        
cufflinks 2.283        
cufflinks 1.329        
cufflinks 1.478        
cufflinks 1.75        
cufflinks 2.279        
cufflinks 0.917       Low
cufflinks 2.276        
cufflinks 2.487       High
cufflinks 2.759       High
cufflinks 1.113       Low
cufflinks 2.713       High
cufflinks 2.186        
cufflinks 1.38        
cufflinks 2.563       High
cufflinks 1.046       Low

0 Strain