Gene : Glyma.04G002800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31742:SF1 - RPA-INTERACTING PROTEIN Genomic Order:  28
Name:  ? Glyma.04G002800 Secondary Identifier:  ? PAC:30487435
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G002800 0.5kb upstream 0.5kb upstream 4343 true Chr04: 222775-227117 Glycine max
Glyma.04G002800 0.5kb upstream 0.5kb upstream 500 false Chr04: 222775-223274 Glycine max
Glyma.04G002800 0.5kb downstream 0.5kb downstream 4343 true Chr04: 223275-227617 Glycine max
Glyma.04G002800 0.5kb downstream 0.5kb downstream 500 false Chr04: 227118-227617 Glycine max
Glyma.04G002800 1.0kb upstream 1.0kb upstream 4843 true Chr04: 222275-227117 Glycine max
Glyma.04G002800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 222275-223274 Glycine max
Glyma.04G002800 1.0kb downstream 1.0kb downstream 4843 true Chr04: 223275-228117 Glycine max
Glyma.04G002800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 227118-228117 Glycine max
Glyma.04G002800 2.0kb upstream 2.0kb upstream 5843 true Chr04: 221275-227117 Glycine max
Glyma.04G002800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 221275-223274 Glycine max
Glyma.04G002800 2.0kb downstream 2.0kb downstream 5843 true Chr04: 223275-229117 Glycine max
Glyma.04G002800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 227118-229117 Glycine max
Glyma.04G002800 5.0kb upstream 5.0kb upstream 8843 true Chr04: 218275-227117 Glycine max
Glyma.04G002800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 218275-223274 Glycine max
Glyma.04G002800 5.0kb downstream 5.0kb downstream 8843 true Chr04: 223275-232117 Glycine max
Glyma.04G002800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 227118-232117 Glycine max
Glyma.04G002800 10.0kb upstream 10.0kb upstream 13843 true Chr04: 213275-227117 Glycine max
Glyma.04G002800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 213275-223274 Glycine max
Glyma.04G002800 10.0kb downstream 10.0kb downstream 13843 true Chr04: 223275-237117 Glycine max
Glyma.04G002800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 227118-237117 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299446 5265 Fabidae View MSA
124061489 5270 Rosid View MSA
123739858 5271 Pentapetalae View MSA
122789905 5272 Eudicot View MSA
122044802 5273 Angiosperm View MSA
121346952 5274 Embryophyte View MSA
123424751 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.87926 0.0 9.76587    
cufflinks 2.55266 0.0 8.77238    
cufflinks 3.88158 0.0 12.6033   High
cufflinks 3.15134 0.0 10.5413    
cufflinks 1.92417 0.0 6.78217   Low
cufflinks 2.69501 0.0 9.20624    
cufflinks 1.97078 0.0 6.94021   Low
cufflinks 2.82887 0.0 9.61256    
cufflinks 2.91782 0.0 9.88897    
cufflinks 0.848        
cufflinks 0.61        
cufflinks 1.204       High
cufflinks 0.792        
cufflinks 0.766        
cufflinks 0.538        
cufflinks 0.797        
cufflinks 0.396       Low
cufflinks 1.089       High
cufflinks 0.662        
cufflinks 0.712        
cufflinks 0.613        
cufflinks 0.775        
cufflinks 0.457       Low
cufflinks 0.72        
cufflinks 0.764        
cufflinks 0.645        

0 Strain