Gene : Glyma.04G007000 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  70
Name:  ? Glyma.04G007000 Secondary Identifier:  ? PAC:30489600
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G007000 0.5kb upstream 0.5kb upstream 2205 true Chr04: 535492-537696 Glycine max
Glyma.04G007000 0.5kb upstream 0.5kb upstream 500 false Chr04: 535492-535991 Glycine max
Glyma.04G007000 0.5kb downstream 0.5kb downstream 2205 true Chr04: 535992-538196 Glycine max
Glyma.04G007000 0.5kb downstream 0.5kb downstream 500 false Chr04: 537697-538196 Glycine max
Glyma.04G007000 1.0kb upstream 1.0kb upstream 2705 true Chr04: 534992-537696 Glycine max
Glyma.04G007000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 534992-535991 Glycine max
Glyma.04G007000 1.0kb downstream 1.0kb downstream 2705 true Chr04: 535992-538696 Glycine max
Glyma.04G007000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 537697-538696 Glycine max
Glyma.04G007000 2.0kb upstream 2.0kb upstream 3705 true Chr04: 533992-537696 Glycine max
Glyma.04G007000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 533992-535991 Glycine max
Glyma.04G007000 2.0kb downstream 2.0kb downstream 3705 true Chr04: 535992-539696 Glycine max
Glyma.04G007000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 537697-539696 Glycine max
Glyma.04G007000 5.0kb upstream 5.0kb upstream 6705 true Chr04: 530992-537696 Glycine max
Glyma.04G007000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 530992-535991 Glycine max
Glyma.04G007000 5.0kb downstream 5.0kb downstream 6705 true Chr04: 535992-542696 Glycine max
Glyma.04G007000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 537697-542696 Glycine max
Glyma.04G007000 10.0kb upstream 10.0kb upstream 11705 true Chr04: 525992-537696 Glycine max
Glyma.04G007000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 525992-535991 Glycine max
Glyma.04G007000 10.0kb downstream 10.0kb downstream 11705 true Chr04: 535992-547696 Glycine max
Glyma.04G007000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 537697-547696 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314444 5265 Fabidae View MSA
124074689 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.58712 0.0 5.39296   High
cufflinks 0.38296 0.0 1.43622    
cufflinks 0.530234 0.0 1.95365    
cufflinks 0.611368 0.0 2.23952    
cufflinks 0.541943 0.0 1.99845    
cufflinks 0.424333 0.0 1.58336    
cufflinks 0.867602 0.0 3.10811    
cufflinks 0.351091 0.0 1.32154   Low
cufflinks 0.555137 0.0 2.0432    
cufflinks 0.332       Low
cufflinks 0.445        
cufflinks 0.873       High
cufflinks 0.47        
cufflinks 0.746       High
cufflinks 0.375        
cufflinks 0.545        
cufflinks 0.482        
cufflinks 0.765       High
cufflinks 0.684        
cufflinks 0.366        
cufflinks 0.335       Low
cufflinks 0.494        
cufflinks 0.786       High
cufflinks 0.378        
cufflinks 0.565        
cufflinks 0.374        

0 Strain