Gene : Glyma.04G019100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23076:SF33 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED Genomic Order:  191
Name:  ? Glyma.04G019100 Secondary Identifier:  ? PAC:30487377
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G019100 0.5kb upstream 0.5kb upstream 4351 true Chr04: 1499743-1504093 Glycine max
Glyma.04G019100 0.5kb upstream 0.5kb upstream 500 false Chr04: 1503594-1504093 Glycine max
Glyma.04G019100 0.5kb downstream 0.5kb downstream 4351 true Chr04: 1499243-1503593 Glycine max
Glyma.04G019100 0.5kb downstream 0.5kb downstream 500 false Chr04: 1499243-1499742 Glycine max
Glyma.04G019100 1.0kb upstream 1.0kb upstream 4851 true Chr04: 1499743-1504593 Glycine max
Glyma.04G019100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1503594-1504593 Glycine max
Glyma.04G019100 1.0kb downstream 1.0kb downstream 4851 true Chr04: 1498743-1503593 Glycine max
Glyma.04G019100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1498743-1499742 Glycine max
Glyma.04G019100 2.0kb upstream 2.0kb upstream 5851 true Chr04: 1499743-1505593 Glycine max
Glyma.04G019100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1503594-1505593 Glycine max
Glyma.04G019100 2.0kb downstream 2.0kb downstream 5851 true Chr04: 1497743-1503593 Glycine max
Glyma.04G019100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1497743-1499742 Glycine max
Glyma.04G019100 5.0kb upstream 5.0kb upstream 8851 true Chr04: 1499743-1508593 Glycine max
Glyma.04G019100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1503594-1508593 Glycine max
Glyma.04G019100 5.0kb downstream 5.0kb downstream 8851 true Chr04: 1494743-1503593 Glycine max
Glyma.04G019100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1494743-1499742 Glycine max
Glyma.04G019100 10.0kb upstream 10.0kb upstream 13851 true Chr04: 1499743-1513593 Glycine max
Glyma.04G019100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1503594-1513593 Glycine max
Glyma.04G019100 10.0kb downstream 10.0kb downstream 13851 true Chr04: 1489743-1503593 Glycine max
Glyma.04G019100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1489743-1499742 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310077 5265 Fabidae View MSA
124060614 5270 Rosid View MSA
123737451 5271 Pentapetalae View MSA
122792150 5272 Eudicot View MSA
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 164.206 0.0 1233.65 High High
cufflinks 15.9453 0.0 48.3658    
cufflinks 40.525 0.0 147.405 High  
cufflinks 25.4033 0.0 82.7167 High  
cufflinks 5.21344 0.0 16.2537    
cufflinks 3.99853 0.0 13.1783   Low
cufflinks 6.44654 0.0 19.6359    
cufflinks 14.5495 0.0 51.4777    
cufflinks 5.95674 0.0 21.6147    
cufflinks 3.389        
cufflinks 2.451        
cufflinks 13.429     High  
cufflinks 4.211        
cufflinks 1.263       Low
cufflinks 2.007       Low
cufflinks 17.53     High High
cufflinks 1.28       Low
cufflinks 7.233        
cufflinks 6.692        
cufflinks 16.918     High High
cufflinks 2.816        
cufflinks 17.937     High High
cufflinks 13.672     High  
cufflinks 3.344        
cufflinks 17.102     High High
cufflinks 2.345        

0 Strain