Gene : Glyma.04G020900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11079:SF73 - RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  209
Name:  ? Glyma.04G020900 Secondary Identifier:  ? PAC:30487804
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G020900 0.5kb upstream 0.5kb upstream 9618 true Chr04: 1642194-1651811 Glycine max
Glyma.04G020900 0.5kb upstream 0.5kb upstream 500 false Chr04: 1651312-1651811 Glycine max
Glyma.04G020900 0.5kb downstream 0.5kb downstream 9618 true Chr04: 1641694-1651311 Glycine max
Glyma.04G020900 0.5kb downstream 0.5kb downstream 500 false Chr04: 1641694-1642193 Glycine max
Glyma.04G020900 1.0kb upstream 1.0kb upstream 10118 true Chr04: 1642194-1652311 Glycine max
Glyma.04G020900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1651312-1652311 Glycine max
Glyma.04G020900 1.0kb downstream 1.0kb downstream 10118 true Chr04: 1641194-1651311 Glycine max
Glyma.04G020900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1641194-1642193 Glycine max
Glyma.04G020900 2.0kb upstream 2.0kb upstream 11118 true Chr04: 1642194-1653311 Glycine max
Glyma.04G020900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1651312-1653311 Glycine max
Glyma.04G020900 2.0kb downstream 2.0kb downstream 11118 true Chr04: 1640194-1651311 Glycine max
Glyma.04G020900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1640194-1642193 Glycine max
Glyma.04G020900 5.0kb upstream 5.0kb upstream 14118 true Chr04: 1642194-1656311 Glycine max
Glyma.04G020900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1651312-1656311 Glycine max
Glyma.04G020900 5.0kb downstream 5.0kb downstream 14118 true Chr04: 1637194-1651311 Glycine max
Glyma.04G020900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1637194-1642193 Glycine max
Glyma.04G020900 10.0kb upstream 10.0kb upstream 19118 true Chr04: 1642194-1661311 Glycine max
Glyma.04G020900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1651312-1661311 Glycine max
Glyma.04G020900 10.0kb downstream 10.0kb downstream 19118 true Chr04: 1632194-1651311 Glycine max
Glyma.04G020900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1632194-1642193 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297491 5265 Fabidae View MSA
124067698 5270 Rosid View MSA
123740494 5271 Pentapetalae View MSA
122788913 5272 Eudicot View MSA
122047561 5273 Angiosperm View MSA
121344474 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.51212 0.0 16.0185    
cufflinks 3.48913 0.0 26.3179   High
cufflinks 1.3579 0.0 11.2594   Low
cufflinks 2.36073 0.0 19.0225    
cufflinks 2.37955 0.0 18.1904    
cufflinks 1.50633 0.0 10.885    
cufflinks 2.12392 0.0 15.7772    
cufflinks 1.79919 0.0 15.7953    
cufflinks 1.50412 0.0 13.3676    
cufflinks 0.078     Low  
cufflinks 0.014     Low Low
cufflinks 0.047     Low  
cufflinks 0.06     Low  
cufflinks 0.071     Low  
cufflinks 0.02     Low Low
cufflinks 0.154       High
cufflinks 0.035     Low  
cufflinks 0.071     Low  
cufflinks 0.108        
cufflinks 0.143       High
cufflinks 0.016     Low Low
cufflinks 0.138       High
cufflinks 0.172       High
cufflinks 0.015     Low Low
cufflinks 0.148       High
cufflinks 0.016     Low Low

0 Strain