Gene : Glyma.03G242500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12817 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B Genomic Order:  2425
Name:  ? Glyma.03G242500 Secondary Identifier:  ? PAC:30518213
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G242500 0.5kb upstream 0.5kb upstream 3366 true Chr03: 44051818-44055183 Glycine max
Glyma.03G242500 0.5kb upstream 0.5kb upstream 500 false Chr03: 44054684-44055183 Glycine max
Glyma.03G242500 0.5kb downstream 0.5kb downstream 3366 true Chr03: 44051318-44054683 Glycine max
Glyma.03G242500 0.5kb downstream 0.5kb downstream 500 false Chr03: 44051318-44051817 Glycine max
Glyma.03G242500 1.0kb upstream 1.0kb upstream 3866 true Chr03: 44051818-44055683 Glycine max
Glyma.03G242500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44054684-44055683 Glycine max
Glyma.03G242500 1.0kb downstream 1.0kb downstream 3866 true Chr03: 44050818-44054683 Glycine max
Glyma.03G242500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44050818-44051817 Glycine max
Glyma.03G242500 2.0kb upstream 2.0kb upstream 4866 true Chr03: 44051818-44056683 Glycine max
Glyma.03G242500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44054684-44056683 Glycine max
Glyma.03G242500 2.0kb downstream 2.0kb downstream 4866 true Chr03: 44049818-44054683 Glycine max
Glyma.03G242500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44049818-44051817 Glycine max
Glyma.03G242500 5.0kb upstream 5.0kb upstream 7866 true Chr03: 44051818-44059683 Glycine max
Glyma.03G242500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44054684-44059683 Glycine max
Glyma.03G242500 5.0kb downstream 5.0kb downstream 7866 true Chr03: 44046818-44054683 Glycine max
Glyma.03G242500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44046818-44051817 Glycine max
Glyma.03G242500 10.0kb upstream 10.0kb upstream 12866 true Chr03: 44051818-44064683 Glycine max
Glyma.03G242500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44054684-44064683 Glycine max
Glyma.03G242500 10.0kb downstream 10.0kb downstream 12866 true Chr03: 44041818-44054683 Glycine max
Glyma.03G242500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44041818-44051817 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122245275 5265 Fabidae Singleton cluster - no MSA
124063659 5270 Rosid View MSA
123746706 5271 Pentapetalae View MSA
122792651 5272 Eudicot View MSA
122041714 5273 Angiosperm View MSA
123428891 5275 Viridiplantae View MSA
121346428 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6758 0.0 71.4464   Low
cufflinks 26.387 0.0 119.662 High  
cufflinks 14.2099 0.0 69.1284   Low
cufflinks 30.4457 0.0 136.428 High  
cufflinks 31.2822 0.0 138.782 High  
cufflinks 37.4162 0.0 166.466 High High
cufflinks 20.4063 0.0 94.4111    
cufflinks 33.3934 0.0 150.755 High  
cufflinks 23.5055 0.0 109.569 High  
cufflinks 4.193       High
cufflinks 0.802       Low
cufflinks 2.049        
cufflinks 4.257       High
cufflinks 5.474       High
cufflinks 0.69       Low
cufflinks 2.213        
cufflinks 1.209        
cufflinks 3.128        
cufflinks 3.21        
cufflinks 1.86        
cufflinks 1.367        
cufflinks 2.087        
cufflinks 2.4        
cufflinks 1.09       Low
cufflinks 1.923        
cufflinks 1.365        

0 Strain