Gene : Glyma.03G245800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12760 - TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  2458
Name:  ? Glyma.03G245800 Secondary Identifier:  ? PAC:30517223
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G245800 0.5kb upstream 0.5kb upstream 4338 true Chr03: 44294666-44299003 Glycine max
Glyma.03G245800 0.5kb upstream 0.5kb upstream 500 false Chr03: 44298504-44299003 Glycine max
Glyma.03G245800 0.5kb downstream 0.5kb downstream 4338 true Chr03: 44294166-44298503 Glycine max
Glyma.03G245800 0.5kb downstream 0.5kb downstream 500 false Chr03: 44294166-44294665 Glycine max
Glyma.03G245800 1.0kb upstream 1.0kb upstream 4838 true Chr03: 44294666-44299503 Glycine max
Glyma.03G245800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44298504-44299503 Glycine max
Glyma.03G245800 1.0kb downstream 1.0kb downstream 4838 true Chr03: 44293666-44298503 Glycine max
Glyma.03G245800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44293666-44294665 Glycine max
Glyma.03G245800 2.0kb upstream 2.0kb upstream 5838 true Chr03: 44294666-44300503 Glycine max
Glyma.03G245800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44298504-44300503 Glycine max
Glyma.03G245800 2.0kb downstream 2.0kb downstream 5838 true Chr03: 44292666-44298503 Glycine max
Glyma.03G245800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44292666-44294665 Glycine max
Glyma.03G245800 5.0kb upstream 5.0kb upstream 8838 true Chr03: 44294666-44303503 Glycine max
Glyma.03G245800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44298504-44303503 Glycine max
Glyma.03G245800 5.0kb downstream 5.0kb downstream 8838 true Chr03: 44289666-44298503 Glycine max
Glyma.03G245800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44289666-44294665 Glycine max
Glyma.03G245800 10.0kb upstream 10.0kb upstream 13838 true Chr03: 44294666-44308503 Glycine max
Glyma.03G245800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44298504-44308503 Glycine max
Glyma.03G245800 10.0kb downstream 10.0kb downstream 13838 true Chr03: 44284666-44298503 Glycine max
Glyma.03G245800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44284666-44294665 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303105 5265 Fabidae View MSA
124068948 5270 Rosid View MSA
123741207 5271 Pentapetalae View MSA
122787866 5272 Eudicot View MSA
122047894 5273 Angiosperm View MSA
121346659 5274 Embryophyte View MSA
123424926 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3594 0.0 38.8139    
cufflinks 13.2889 0.0 36.0674   Low
cufflinks 13.8251 0.0 37.4059   Low
cufflinks 14.7968 0.0 39.8948    
cufflinks 23.0172 0.0 61.4081 High High
cufflinks 20.8157 0.0 55.5807    
cufflinks 18.3593 0.0 49.1626    
cufflinks 19.1785 0.0 51.2759    
cufflinks 19.2402 0.0 51.439    
cufflinks 6.159        
cufflinks 3.756       Low
cufflinks 4.787        
cufflinks 8.957     High High
cufflinks 11.118     High High
cufflinks 4.449        
cufflinks 5.929        
cufflinks 4.716        
cufflinks 5.611        
cufflinks 5.207        
cufflinks 6.535        
cufflinks 5.004        
cufflinks 6.278        
cufflinks 5.778        
cufflinks 5.161        
cufflinks 6.254        
cufflinks 5.136        

0 Strain