Gene : Glyma.19G123100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23089:SF12 - HIS TRIAD FAMILY PROTEIN 3 Genomic Order:  1231
Name:  ? Glyma.19G123100 Secondary Identifier:  ? PAC:30514228
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G123100 0.5kb upstream 0.5kb upstream 4942 true Chr19: 38121071-38126012 Glycine max
Glyma.19G123100 0.5kb upstream 0.5kb upstream 500 false Chr19: 38121071-38121570 Glycine max
Glyma.19G123100 0.5kb downstream 0.5kb downstream 4942 true Chr19: 38121571-38126512 Glycine max
Glyma.19G123100 0.5kb downstream 0.5kb downstream 500 false Chr19: 38126013-38126512 Glycine max
Glyma.19G123100 1.0kb upstream 1.0kb upstream 5442 true Chr19: 38120571-38126012 Glycine max
Glyma.19G123100 1.0kb upstream 1.0kb upstream 1000 false Chr19: 38120571-38121570 Glycine max
Glyma.19G123100 1.0kb downstream 1.0kb downstream 5442 true Chr19: 38121571-38127012 Glycine max
Glyma.19G123100 1.0kb downstream 1.0kb downstream 1000 false Chr19: 38126013-38127012 Glycine max
Glyma.19G123100 2.0kb upstream 2.0kb upstream 6442 true Chr19: 38119571-38126012 Glycine max
Glyma.19G123100 2.0kb upstream 2.0kb upstream 2000 false Chr19: 38119571-38121570 Glycine max
Glyma.19G123100 2.0kb downstream 2.0kb downstream 6442 true Chr19: 38121571-38128012 Glycine max
Glyma.19G123100 2.0kb downstream 2.0kb downstream 2000 false Chr19: 38126013-38128012 Glycine max
Glyma.19G123100 5.0kb upstream 5.0kb upstream 9442 true Chr19: 38116571-38126012 Glycine max
Glyma.19G123100 5.0kb upstream 5.0kb upstream 5000 false Chr19: 38116571-38121570 Glycine max
Glyma.19G123100 5.0kb downstream 5.0kb downstream 9442 true Chr19: 38121571-38131012 Glycine max
Glyma.19G123100 5.0kb downstream 5.0kb downstream 5000 false Chr19: 38126013-38131012 Glycine max
Glyma.19G123100 10.0kb upstream 10.0kb upstream 14442 true Chr19: 38111571-38126012 Glycine max
Glyma.19G123100 10.0kb upstream 10.0kb upstream 10000 false Chr19: 38111571-38121570 Glycine max
Glyma.19G123100 10.0kb downstream 10.0kb downstream 14442 true Chr19: 38121571-38136012 Glycine max
Glyma.19G123100 10.0kb downstream 10.0kb downstream 10000 false Chr19: 38126013-38136012 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121613564 5273 Angiosperm Singleton cluster - no MSA
122247601 5265 Fabidae Singleton cluster - no MSA
123991336 5270 Rosid Singleton cluster - no MSA
123566296 5271 Pentapetalae Singleton cluster - no MSA
122601056 5272 Eudicot Singleton cluster - no MSA
120885778 5274 Embryophyte Singleton cluster - no MSA
122926554 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.98978 0.0 37.4984   Low
cufflinks 39.4636 0.0 131.802 High High
cufflinks 20.9638 0.0 74.9773 High  
cufflinks 27.2456 0.0 94.1401 High  
cufflinks 24.0256 0.0 84.8931 High  
cufflinks 22.896 0.0 81.4723 High  
cufflinks 34.4698 0.0 116.816 High  
cufflinks 32.8718 0.0 111.356 High  
cufflinks 28.9622 0.0 99.1958 High  
cufflinks 1.614        
cufflinks 0.286       Low
cufflinks 1.265        
cufflinks 1.23        
cufflinks 1.412        
cufflinks 0.994        
cufflinks 1.328        
cufflinks 0.828        
cufflinks 1.845       High
cufflinks 1.902       High
cufflinks 0.992        
cufflinks 0.431       Low
cufflinks 1.147        
cufflinks 1.393        
cufflinks 0.352       Low
cufflinks 1.282        
cufflinks 0.55       Low

0 Strain