Gene : Glyma.03G262300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR21649:SF13 - LHCA2 PROTEIN Genomic Order:  2623
Name:  ? Glyma.03G262300 Secondary Identifier:  ? PAC:30515836
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G262300 0.5kb upstream 0.5kb upstream 2059 true Chr03: 45569952-45572010 Glycine max
Glyma.03G262300 0.5kb upstream 0.5kb upstream 500 false Chr03: 45571511-45572010 Glycine max
Glyma.03G262300 0.5kb downstream 0.5kb downstream 2059 true Chr03: 45569452-45571510 Glycine max
Glyma.03G262300 0.5kb downstream 0.5kb downstream 500 false Chr03: 45569452-45569951 Glycine max
Glyma.03G262300 1.0kb upstream 1.0kb upstream 2559 true Chr03: 45569952-45572510 Glycine max
Glyma.03G262300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 45571511-45572510 Glycine max
Glyma.03G262300 1.0kb downstream 1.0kb downstream 2559 true Chr03: 45568952-45571510 Glycine max
Glyma.03G262300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 45568952-45569951 Glycine max
Glyma.03G262300 2.0kb upstream 2.0kb upstream 3559 true Chr03: 45569952-45573510 Glycine max
Glyma.03G262300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 45571511-45573510 Glycine max
Glyma.03G262300 2.0kb downstream 2.0kb downstream 3559 true Chr03: 45567952-45571510 Glycine max
Glyma.03G262300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 45567952-45569951 Glycine max
Glyma.03G262300 5.0kb upstream 5.0kb upstream 6559 true Chr03: 45569952-45576510 Glycine max
Glyma.03G262300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 45571511-45576510 Glycine max
Glyma.03G262300 5.0kb downstream 5.0kb downstream 6559 true Chr03: 45564952-45571510 Glycine max
Glyma.03G262300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 45564952-45569951 Glycine max
Glyma.03G262300 10.0kb upstream 10.0kb upstream 11559 true Chr03: 45569952-45581510 Glycine max
Glyma.03G262300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 45571511-45581510 Glycine max
Glyma.03G262300 10.0kb downstream 10.0kb downstream 11559 true Chr03: 45559952-45571510 Glycine max
Glyma.03G262300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 45559952-45569951 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309685 5265 Fabidae View MSA
124065144 5270 Rosid View MSA
123742469 5271 Pentapetalae View MSA
122790167 5272 Eudicot View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 170.421 0.0 807.57 High  
cufflinks 250.902 0.0 1436.48 High High
cufflinks 132.584 0.0 561.888 High  
cufflinks 143.655 0.0 628.218 High  
cufflinks 28.1897 0.0 96.9728 High Low
cufflinks 22.421 0.0 66.6863   Low
cufflinks 130.794 0.0 553.795 High  
cufflinks 135.104 0.0 582.513 High  
cufflinks 18.507 0.0 64.3752   Low
cufflinks 78.957     High  
cufflinks 3.391        
cufflinks 67.135     High  
cufflinks 0.463       Low
cufflinks 0.448       Low
cufflinks 5.938     High  
cufflinks 220.962     High High
cufflinks 0.625       Low
cufflinks 53.394     High  
cufflinks 107.044     High  
cufflinks 259.528     High High
cufflinks 2.121        
cufflinks 274.187     High High
cufflinks 188.273     High  
cufflinks 4.484        
cufflinks 261.019     High High
cufflinks 3.361        

0 Strain