Gene : Glyma.19G116000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31412:SF0 - ZINC METALLOPROTEASE EGY1, CHLOROPLASTIC-RELATED Genomic Order:  1160
Name:  ? Glyma.19G116000 Secondary Identifier:  ? PAC:30512741
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G116000 0.5kb upstream 0.5kb upstream 7497 true Chr19: 37135957-37143453 Glycine max
Glyma.19G116000 0.5kb upstream 0.5kb upstream 500 false Chr19: 37142954-37143453 Glycine max
Glyma.19G116000 0.5kb downstream 0.5kb downstream 7497 true Chr19: 37135457-37142953 Glycine max
Glyma.19G116000 0.5kb downstream 0.5kb downstream 500 false Chr19: 37135457-37135956 Glycine max
Glyma.19G116000 1.0kb upstream 1.0kb upstream 7997 true Chr19: 37135957-37143953 Glycine max
Glyma.19G116000 1.0kb upstream 1.0kb upstream 1000 false Chr19: 37142954-37143953 Glycine max
Glyma.19G116000 1.0kb downstream 1.0kb downstream 7997 true Chr19: 37134957-37142953 Glycine max
Glyma.19G116000 1.0kb downstream 1.0kb downstream 1000 false Chr19: 37134957-37135956 Glycine max
Glyma.19G116000 2.0kb upstream 2.0kb upstream 8997 true Chr19: 37135957-37144953 Glycine max
Glyma.19G116000 2.0kb upstream 2.0kb upstream 2000 false Chr19: 37142954-37144953 Glycine max
Glyma.19G116000 2.0kb downstream 2.0kb downstream 8997 true Chr19: 37133957-37142953 Glycine max
Glyma.19G116000 2.0kb downstream 2.0kb downstream 2000 false Chr19: 37133957-37135956 Glycine max
Glyma.19G116000 5.0kb upstream 5.0kb upstream 11997 true Chr19: 37135957-37147953 Glycine max
Glyma.19G116000 5.0kb upstream 5.0kb upstream 5000 false Chr19: 37142954-37147953 Glycine max
Glyma.19G116000 5.0kb downstream 5.0kb downstream 11997 true Chr19: 37130957-37142953 Glycine max
Glyma.19G116000 5.0kb downstream 5.0kb downstream 5000 false Chr19: 37130957-37135956 Glycine max
Glyma.19G116000 10.0kb upstream 10.0kb upstream 16997 true Chr19: 37135957-37152953 Glycine max
Glyma.19G116000 10.0kb upstream 10.0kb upstream 10000 false Chr19: 37142954-37152953 Glycine max
Glyma.19G116000 10.0kb downstream 10.0kb downstream 16997 true Chr19: 37125957-37142953 Glycine max
Glyma.19G116000 10.0kb downstream 10.0kb downstream 10000 false Chr19: 37125957-37135956 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308116 5265 Fabidae View MSA
124065213 5270 Rosid View MSA
123737712 5271 Pentapetalae View MSA
122791466 5272 Eudicot View MSA
122047981 5273 Angiosperm View MSA
121344636 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.02699 0.0 32.5912   High
cufflinks 4.90207 0.0 20.1227    
cufflinks 2.36627 0.0 10.6312    
cufflinks 3.53989 0.0 13.9921    
cufflinks 5.97582 0.0 23.3703    
cufflinks 1.50291 0.0 7.69415   Low
cufflinks 4.91746 0.0 20.3853    
cufflinks 2.63745 0.0 11.5679    
cufflinks 14.6432 0.0 50.7191   High
cufflinks 0.326        
cufflinks 0.276        
cufflinks 0.455        
cufflinks 0.212       Low
cufflinks 0.222        
cufflinks 0.725        
cufflinks 0.927       High
cufflinks 0.185       Low
cufflinks 0.552        
cufflinks 0.647        
cufflinks 0.954       High
cufflinks 0.21       Low
cufflinks 0.869       High
cufflinks 1.085       High
cufflinks 0.208       Low
cufflinks 0.934       High
cufflinks 0.18       Low

0 Strain