Gene : Glyma.19G116200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33284:SF1 - RIBOSOMAL L25/TL5/CTC N-TERMINAL 5S RRNA BINDING DOMAIN-CONTAINING PROTEIN Genomic Order:  1162
Name:  ? Glyma.19G116200 Secondary Identifier:  ? PAC:30515176
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G116200 0.5kb upstream 0.5kb upstream 3952 true Chr19: 37158367-37162318 Glycine max
Glyma.19G116200 0.5kb upstream 0.5kb upstream 500 false Chr19: 37158367-37158866 Glycine max
Glyma.19G116200 0.5kb downstream 0.5kb downstream 3952 true Chr19: 37158867-37162818 Glycine max
Glyma.19G116200 0.5kb downstream 0.5kb downstream 500 false Chr19: 37162319-37162818 Glycine max
Glyma.19G116200 1.0kb upstream 1.0kb upstream 4452 true Chr19: 37157867-37162318 Glycine max
Glyma.19G116200 1.0kb upstream 1.0kb upstream 1000 false Chr19: 37157867-37158866 Glycine max
Glyma.19G116200 1.0kb downstream 1.0kb downstream 4452 true Chr19: 37158867-37163318 Glycine max
Glyma.19G116200 1.0kb downstream 1.0kb downstream 1000 false Chr19: 37162319-37163318 Glycine max
Glyma.19G116200 2.0kb upstream 2.0kb upstream 5452 true Chr19: 37156867-37162318 Glycine max
Glyma.19G116200 2.0kb upstream 2.0kb upstream 2000 false Chr19: 37156867-37158866 Glycine max
Glyma.19G116200 2.0kb downstream 2.0kb downstream 5452 true Chr19: 37158867-37164318 Glycine max
Glyma.19G116200 2.0kb downstream 2.0kb downstream 2000 false Chr19: 37162319-37164318 Glycine max
Glyma.19G116200 5.0kb upstream 5.0kb upstream 8452 true Chr19: 37153867-37162318 Glycine max
Glyma.19G116200 5.0kb upstream 5.0kb upstream 5000 false Chr19: 37153867-37158866 Glycine max
Glyma.19G116200 5.0kb downstream 5.0kb downstream 8452 true Chr19: 37158867-37167318 Glycine max
Glyma.19G116200 5.0kb downstream 5.0kb downstream 5000 false Chr19: 37162319-37167318 Glycine max
Glyma.19G116200 10.0kb upstream 10.0kb upstream 13452 true Chr19: 37148867-37162318 Glycine max
Glyma.19G116200 10.0kb upstream 10.0kb upstream 10000 false Chr19: 37148867-37158866 Glycine max
Glyma.19G116200 10.0kb downstream 10.0kb downstream 13452 true Chr19: 37158867-37172318 Glycine max
Glyma.19G116200 10.0kb downstream 10.0kb downstream 10000 false Chr19: 37162319-37172318 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306243 5265 Fabidae View MSA
124062283 5270 Rosid View MSA
123743591 5271 Pentapetalae View MSA
122793831 5272 Eudicot View MSA
122044337 5273 Angiosperm View MSA
121344036 5274 Embryophyte View MSA
123426023 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.37711 0.0 29.7331    
cufflinks 5.11571 0.0 21.0393    
cufflinks 2.56014 0.0 13.2311   Low
cufflinks 5.63615 0.0 22.5281    
cufflinks 10.0002 0.0 38.5729   High
cufflinks 3.01407 0.0 14.8822   Low
cufflinks 6.82783 0.0 29.7775    
cufflinks 7.16728 0.0 30.341    
cufflinks 8.59853 0.0 34.2926    
cufflinks 0.77        
cufflinks 0.093       Low
cufflinks 0.555        
cufflinks 1.547       High
cufflinks 2.376       High
cufflinks 0.282        
cufflinks 0.413        
cufflinks 0.276        
cufflinks 0.651        
cufflinks 0.854        
cufflinks 0.222        
cufflinks 0.214        
cufflinks 0.282        
cufflinks 0.455        
cufflinks 0.144       Low
cufflinks 0.351        
cufflinks 0.344        

0 Strain