Gene : Glyma.03G230200 G. max Wm82.a2.v1
Defline:  (1 of 16) PTHR10529 - LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED Genomic Order:  2302
Name:  ? Glyma.03G230200 Secondary Identifier:  ? PAC:30515700
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Ontology Annotation Displayer

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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G230200 0.5kb upstream 0.5kb upstream 3787 true Chr03: 43198374-43202160 Glycine max
Glyma.03G230200 0.5kb upstream 0.5kb upstream 500 false Chr03: 43198374-43198873 Glycine max
Glyma.03G230200 0.5kb downstream 0.5kb downstream 3787 true Chr03: 43198874-43202660 Glycine max
Glyma.03G230200 0.5kb downstream 0.5kb downstream 500 false Chr03: 43202161-43202660 Glycine max
Glyma.03G230200 1.0kb upstream 1.0kb upstream 4287 true Chr03: 43197874-43202160 Glycine max
Glyma.03G230200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 43197874-43198873 Glycine max
Glyma.03G230200 1.0kb downstream 1.0kb downstream 4287 true Chr03: 43198874-43203160 Glycine max
Glyma.03G230200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 43202161-43203160 Glycine max
Glyma.03G230200 2.0kb upstream 2.0kb upstream 5287 true Chr03: 43196874-43202160 Glycine max
Glyma.03G230200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 43196874-43198873 Glycine max
Glyma.03G230200 2.0kb downstream 2.0kb downstream 5287 true Chr03: 43198874-43204160 Glycine max
Glyma.03G230200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 43202161-43204160 Glycine max
Glyma.03G230200 5.0kb upstream 5.0kb upstream 8287 true Chr03: 43193874-43202160 Glycine max
Glyma.03G230200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 43193874-43198873 Glycine max
Glyma.03G230200 5.0kb downstream 5.0kb downstream 8287 true Chr03: 43198874-43207160 Glycine max
Glyma.03G230200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 43202161-43207160 Glycine max
Glyma.03G230200 10.0kb upstream 10.0kb upstream 13287 true Chr03: 43188874-43202160 Glycine max
Glyma.03G230200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 43188874-43198873 Glycine max
Glyma.03G230200 10.0kb downstream 10.0kb downstream 13287 true Chr03: 43198874-43212160 Glycine max
Glyma.03G230200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 43202161-43212160 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299453 5265 Fabidae View MSA
124067880 5270 Rosid View MSA
123739903 5271 Pentapetalae View MSA
122788597 5272 Eudicot View MSA
122044691 5273 Angiosperm View MSA
121345479 5274 Embryophyte View MSA
123425164 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.95608 0.0 9.97407   Low
cufflinks 3.87069 0.0 15.5224    
cufflinks 3.12662 0.0 13.1964   Low
cufflinks 5.01009 0.0 18.5222    
cufflinks 5.40313 0.0 19.5325    
cufflinks 5.55798 0.0 19.8266   High
cufflinks 5.01373 0.0 18.6196    
cufflinks 4.87473 0.0 17.9574    
cufflinks 4.00648 0.0 15.7436    
cufflinks 1.168        
cufflinks 0.367       Low
cufflinks 1.124        
cufflinks 1.411       High
cufflinks 1.758       High
cufflinks 0.351       Low
cufflinks 0.767        
cufflinks 0.637        
cufflinks 1.124        
cufflinks 1.225        
cufflinks 0.713        
cufflinks 0.462       Low
cufflinks 0.816        
cufflinks 0.895        
cufflinks 0.62        
cufflinks 0.69        
cufflinks 0.533        

0 Strain