Gene : Glyma.19G120400 G. max Wm82.a2.v1
Defline:  (1 of 5) 2.3.3.13//2.3.3.14 - 2-isopropylmalate synthase / Isopropylmalate synthetase // Homocitrate synthase / Homocitrate synthetase Genomic Order:  1204
Name:  ? Glyma.19G120400 Secondary Identifier:  ? PAC:30513953
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BRANCHED-CHAIN-AA-SYN-PWY Glycine max pathologic  
Gmax LEUSYN-PWY Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G120400 0.5kb upstream 0.5kb upstream 26631 true Chr19: 37805284-37831914 Glycine max
Glyma.19G120400 0.5kb upstream 0.5kb upstream 500 false Chr19: 37805284-37805783 Glycine max
Glyma.19G120400 0.5kb downstream 0.5kb downstream 26631 true Chr19: 37805784-37832414 Glycine max
Glyma.19G120400 0.5kb downstream 0.5kb downstream 500 false Chr19: 37831915-37832414 Glycine max
Glyma.19G120400 1.0kb upstream 1.0kb upstream 27131 true Chr19: 37804784-37831914 Glycine max
Glyma.19G120400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 37804784-37805783 Glycine max
Glyma.19G120400 1.0kb downstream 1.0kb downstream 27131 true Chr19: 37805784-37832914 Glycine max
Glyma.19G120400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 37831915-37832914 Glycine max
Glyma.19G120400 2.0kb upstream 2.0kb upstream 28131 true Chr19: 37803784-37831914 Glycine max
Glyma.19G120400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 37803784-37805783 Glycine max
Glyma.19G120400 2.0kb downstream 2.0kb downstream 28131 true Chr19: 37805784-37833914 Glycine max
Glyma.19G120400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 37831915-37833914 Glycine max
Glyma.19G120400 5.0kb upstream 5.0kb upstream 31131 true Chr19: 37800784-37831914 Glycine max
Glyma.19G120400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 37800784-37805783 Glycine max
Glyma.19G120400 5.0kb downstream 5.0kb downstream 31131 true Chr19: 37805784-37836914 Glycine max
Glyma.19G120400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 37831915-37836914 Glycine max
Glyma.19G120400 10.0kb upstream 10.0kb upstream 36131 true Chr19: 37795784-37831914 Glycine max
Glyma.19G120400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 37795784-37805783 Glycine max
Glyma.19G120400 10.0kb downstream 10.0kb downstream 36131 true Chr19: 37805784-37841914 Glycine max
Glyma.19G120400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 37831915-37841914 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250492 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.107406 0.0 0.421087 Low  
cufflinks 4.07561 0.0 11.7761    
cufflinks 166.381 0.0 610.445 High High
cufflinks 2.55625 0.0 7.89722    
cufflinks 0.0187688 0.0 0.080434 Low Low
cufflinks 107.197 0.0 352.843 High High
cufflinks 0.0295976 0.0 0.122571 Low Low
cufflinks 26.0017 0.0 70.5842 High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.864       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.203     High High
cufflinks 0.001     Low  
cufflinks 0.002     Low  
cufflinks 0.482       High
cufflinks 0.039     Low  
cufflinks 0.004     Low  
cufflinks 0.001     Low  
cufflinks 0.001     Low  
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain