Gene : Glyma.04G065500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24007//PTHR24007:SF6 - BRCA1-ASSOCIATED PROTEIN Genomic Order:  655
Name:  ? Glyma.04G065500 Secondary Identifier:  ? PAC:30488615
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G065500 0.5kb upstream 0.5kb upstream 8807 true Chr04: 5441369-5450175 Glycine max
Glyma.04G065500 0.5kb upstream 0.5kb upstream 500 false Chr04: 5449676-5450175 Glycine max
Glyma.04G065500 0.5kb downstream 0.5kb downstream 8807 true Chr04: 5440869-5449675 Glycine max
Glyma.04G065500 0.5kb downstream 0.5kb downstream 500 false Chr04: 5440869-5441368 Glycine max
Glyma.04G065500 1.0kb upstream 1.0kb upstream 9307 true Chr04: 5441369-5450675 Glycine max
Glyma.04G065500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5449676-5450675 Glycine max
Glyma.04G065500 1.0kb downstream 1.0kb downstream 9307 true Chr04: 5440369-5449675 Glycine max
Glyma.04G065500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5440369-5441368 Glycine max
Glyma.04G065500 2.0kb upstream 2.0kb upstream 10307 true Chr04: 5441369-5451675 Glycine max
Glyma.04G065500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5449676-5451675 Glycine max
Glyma.04G065500 2.0kb downstream 2.0kb downstream 10307 true Chr04: 5439369-5449675 Glycine max
Glyma.04G065500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5439369-5441368 Glycine max
Glyma.04G065500 5.0kb upstream 5.0kb upstream 13307 true Chr04: 5441369-5454675 Glycine max
Glyma.04G065500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5449676-5454675 Glycine max
Glyma.04G065500 5.0kb downstream 5.0kb downstream 13307 true Chr04: 5436369-5449675 Glycine max
Glyma.04G065500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5436369-5441368 Glycine max
Glyma.04G065500 10.0kb upstream 10.0kb upstream 18307 true Chr04: 5441369-5459675 Glycine max
Glyma.04G065500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5449676-5459675 Glycine max
Glyma.04G065500 10.0kb downstream 10.0kb downstream 18307 true Chr04: 5431369-5449675 Glycine max
Glyma.04G065500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5431369-5441368 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122249014 5265 Fabidae Singleton cluster - no MSA
124041952 5270 Rosid View MSA
123612507 5271 Pentapetalae View MSA
122647006 5272 Eudicot View MSA
122050802 5273 Angiosperm View MSA
121344961 5274 Embryophyte View MSA
123425037 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.52035 0.0 20.133    
cufflinks 5.43762 0.0 14.5105    
cufflinks 5.74221 0.0 15.3195    
cufflinks 8.90138 0.0 23.9777   High
cufflinks 6.75253 0.0 18.0371    
cufflinks 3.9107 0.0 10.5134   Low
cufflinks 8.46971 0.0 22.7557   High
cufflinks 7.02166 0.0 18.7691    
cufflinks 6.37634 0.0 17.0191    
cufflinks 4.518        
cufflinks 4.425        
cufflinks 5.676        
cufflinks 4.404        
cufflinks 5.013        
cufflinks 5.396     High  
cufflinks 4.897        
cufflinks 3.374       Low
cufflinks 5.941       High
cufflinks 6.487       High
cufflinks 5.18        
cufflinks 4.641        
cufflinks 5.544        
cufflinks 4.493        
cufflinks 5.052        
cufflinks 5.117        
cufflinks 4.768        

0 Strain