Gene : Glyma.04G083600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10543//PTHR10543:SF30 - BETA-CAROTENE DIOXYGENASE Genomic Order:  836
Name:  ? Glyma.04G083600 Secondary Identifier:  ? PAC:30489692
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-695 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G083600 0.5kb upstream 0.5kb upstream 5256 true Chr04: 7048192-7053447 Glycine max
Glyma.04G083600 0.5kb upstream 0.5kb upstream 500 false Chr04: 7052948-7053447 Glycine max
Glyma.04G083600 0.5kb downstream 0.5kb downstream 5256 true Chr04: 7047692-7052947 Glycine max
Glyma.04G083600 0.5kb downstream 0.5kb downstream 500 false Chr04: 7047692-7048191 Glycine max
Glyma.04G083600 1.0kb upstream 1.0kb upstream 5756 true Chr04: 7048192-7053947 Glycine max
Glyma.04G083600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7052948-7053947 Glycine max
Glyma.04G083600 1.0kb downstream 1.0kb downstream 5756 true Chr04: 7047192-7052947 Glycine max
Glyma.04G083600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7047192-7048191 Glycine max
Glyma.04G083600 2.0kb upstream 2.0kb upstream 6756 true Chr04: 7048192-7054947 Glycine max
Glyma.04G083600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7052948-7054947 Glycine max
Glyma.04G083600 2.0kb downstream 2.0kb downstream 6756 true Chr04: 7046192-7052947 Glycine max
Glyma.04G083600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7046192-7048191 Glycine max
Glyma.04G083600 5.0kb upstream 5.0kb upstream 9756 true Chr04: 7048192-7057947 Glycine max
Glyma.04G083600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7052948-7057947 Glycine max
Glyma.04G083600 5.0kb downstream 5.0kb downstream 9756 true Chr04: 7043192-7052947 Glycine max
Glyma.04G083600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7043192-7048191 Glycine max
Glyma.04G083600 10.0kb upstream 10.0kb upstream 14756 true Chr04: 7048192-7062947 Glycine max
Glyma.04G083600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7052948-7062947 Glycine max
Glyma.04G083600 10.0kb downstream 10.0kb downstream 14756 true Chr04: 7038192-7052947 Glycine max
Glyma.04G083600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7038192-7048191 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315451 5265 Fabidae View MSA
124075494 5270 Rosid View MSA
123647480 5271 Pentapetalae View MSA
122681454 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.196483 0.0 0.765419 Low High
cufflinks 0.0190115 0.0 0.084151 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.041168 0.0 0.171901 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.076     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.292       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain