Gene : Glyma.19G159400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  1594
Name:  ? Glyma.19G159400 Secondary Identifier:  ? PAC:30512962
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G159400 0.5kb upstream 0.5kb upstream 10245 true Chr19: 42015235-42025479 Glycine max
Glyma.19G159400 0.5kb upstream 0.5kb upstream 500 false Chr19: 42015235-42015734 Glycine max
Glyma.19G159400 0.5kb downstream 0.5kb downstream 10245 true Chr19: 42015735-42025979 Glycine max
Glyma.19G159400 0.5kb downstream 0.5kb downstream 500 false Chr19: 42025480-42025979 Glycine max
Glyma.19G159400 1.0kb upstream 1.0kb upstream 10745 true Chr19: 42014735-42025479 Glycine max
Glyma.19G159400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 42014735-42015734 Glycine max
Glyma.19G159400 1.0kb downstream 1.0kb downstream 10745 true Chr19: 42015735-42026479 Glycine max
Glyma.19G159400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 42025480-42026479 Glycine max
Glyma.19G159400 2.0kb upstream 2.0kb upstream 11745 true Chr19: 42013735-42025479 Glycine max
Glyma.19G159400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 42013735-42015734 Glycine max
Glyma.19G159400 2.0kb downstream 2.0kb downstream 11745 true Chr19: 42015735-42027479 Glycine max
Glyma.19G159400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 42025480-42027479 Glycine max
Glyma.19G159400 5.0kb upstream 5.0kb upstream 14745 true Chr19: 42010735-42025479 Glycine max
Glyma.19G159400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 42010735-42015734 Glycine max
Glyma.19G159400 5.0kb downstream 5.0kb downstream 14745 true Chr19: 42015735-42030479 Glycine max
Glyma.19G159400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 42025480-42030479 Glycine max
Glyma.19G159400 10.0kb upstream 10.0kb upstream 19745 true Chr19: 42005735-42025479 Glycine max
Glyma.19G159400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 42005735-42015734 Glycine max
Glyma.19G159400 10.0kb downstream 10.0kb downstream 19745 true Chr19: 42015735-42035479 Glycine max
Glyma.19G159400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 42025480-42035479 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311802 5265 Fabidae View MSA
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.30345 0.0 19.4526   Low
cufflinks 6.34734 0.0 33.4126   High
cufflinks 4.44342 0.0 23.1286    
cufflinks 5.15182 0.0 23.6788    
cufflinks 4.48394 0.0 23.7889    
cufflinks 3.49965 0.0 20.6455   Low
cufflinks 4.80376 0.0 22.906    
cufflinks 8.04287 0.0 39.2237   High
cufflinks 3.95316 0.0 23.3494    
cufflinks 0.369       High
cufflinks 0.079       Low
cufflinks 0.187        
cufflinks 0.177        
cufflinks 0.191        
cufflinks 0.303       High
cufflinks 0.194        
cufflinks 0.148        
cufflinks 0.215        
cufflinks 0.342       High
cufflinks 0.163        
cufflinks 0.133        
cufflinks 0.19        
cufflinks 0.243        
cufflinks 0.101       Low
cufflinks 0.184        
cufflinks 0.142        

0 Strain