Gene : Glyma.04G088200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22950:SF278 - AMINO ACID PERMEASE 1-RELATED Genomic Order:  882
Name:  ? Glyma.04G088200 Secondary Identifier:  ? PAC:30487735
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G088200 0.5kb upstream 0.5kb upstream 5288 true Chr04: 7564142-7569429 Glycine max
Glyma.04G088200 0.5kb upstream 0.5kb upstream 500 false Chr04: 7568930-7569429 Glycine max
Glyma.04G088200 0.5kb downstream 0.5kb downstream 5288 true Chr04: 7563642-7568929 Glycine max
Glyma.04G088200 0.5kb downstream 0.5kb downstream 500 false Chr04: 7563642-7564141 Glycine max
Glyma.04G088200 1.0kb upstream 1.0kb upstream 5788 true Chr04: 7564142-7569929 Glycine max
Glyma.04G088200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7568930-7569929 Glycine max
Glyma.04G088200 1.0kb downstream 1.0kb downstream 5788 true Chr04: 7563142-7568929 Glycine max
Glyma.04G088200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7563142-7564141 Glycine max
Glyma.04G088200 2.0kb upstream 2.0kb upstream 6788 true Chr04: 7564142-7570929 Glycine max
Glyma.04G088200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7568930-7570929 Glycine max
Glyma.04G088200 2.0kb downstream 2.0kb downstream 6788 true Chr04: 7562142-7568929 Glycine max
Glyma.04G088200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7562142-7564141 Glycine max
Glyma.04G088200 5.0kb upstream 5.0kb upstream 9788 true Chr04: 7564142-7573929 Glycine max
Glyma.04G088200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7568930-7573929 Glycine max
Glyma.04G088200 5.0kb downstream 5.0kb downstream 9788 true Chr04: 7559142-7568929 Glycine max
Glyma.04G088200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7559142-7564141 Glycine max
Glyma.04G088200 10.0kb upstream 10.0kb upstream 14788 true Chr04: 7564142-7578929 Glycine max
Glyma.04G088200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7568930-7578929 Glycine max
Glyma.04G088200 10.0kb downstream 10.0kb downstream 14788 true Chr04: 7554142-7568929 Glycine max
Glyma.04G088200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7554142-7564141 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301855 5265 Fabidae View MSA
124060792 5270 Rosid View MSA
123749377 5271 Pentapetalae View MSA
122789981 5272 Eudicot View MSA
122044939 5273 Angiosperm View MSA
121310365 5274 Embryophyte View MSA
123347867 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.8915 0.0 58.811    
cufflinks 2.5502 0.0 12.9013    
cufflinks 6.79914 0.0 23.5347    
cufflinks 10.089 0.0 34.9371    
cufflinks 10.4812 0.0 36.5089    
cufflinks 1.68847 0.0 8.00299   Low
cufflinks 0.747425 0.0 6.52773   Low
cufflinks 46.2702 0.0 143.011 High High
cufflinks 19.199 0.0 59.0935    
cufflinks 5.884        
cufflinks 0.694        
cufflinks 4.035        
cufflinks 6.268       High
cufflinks 0.478        
cufflinks 0.004     Low Low
cufflinks 0.722        
cufflinks 5.581        
cufflinks 3.849        
cufflinks 0.195        
cufflinks 0.64        
cufflinks 2.211        
cufflinks 0.826        
cufflinks 0.482        
cufflinks 1.726        
cufflinks 0.869        
cufflinks 3.286        

0 Strain