Gene : Glyma.19G150400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12897 - COLON CANCER-ASSOCIATED PROTEIN MIC1 Genomic Order:  1504
Name:  ? Glyma.19G150400 Secondary Identifier:  ? PAC:30513907
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G150400 0.5kb upstream 0.5kb upstream 8212 true Chr19: 41079177-41087388 Glycine max
Glyma.19G150400 0.5kb upstream 0.5kb upstream 500 false Chr19: 41086889-41087388 Glycine max
Glyma.19G150400 0.5kb downstream 0.5kb downstream 8212 true Chr19: 41078677-41086888 Glycine max
Glyma.19G150400 0.5kb downstream 0.5kb downstream 500 false Chr19: 41078677-41079176 Glycine max
Glyma.19G150400 1.0kb upstream 1.0kb upstream 8712 true Chr19: 41079177-41087888 Glycine max
Glyma.19G150400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 41086889-41087888 Glycine max
Glyma.19G150400 1.0kb downstream 1.0kb downstream 8712 true Chr19: 41078177-41086888 Glycine max
Glyma.19G150400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 41078177-41079176 Glycine max
Glyma.19G150400 2.0kb upstream 2.0kb upstream 9712 true Chr19: 41079177-41088888 Glycine max
Glyma.19G150400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 41086889-41088888 Glycine max
Glyma.19G150400 2.0kb downstream 2.0kb downstream 9712 true Chr19: 41077177-41086888 Glycine max
Glyma.19G150400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 41077177-41079176 Glycine max
Glyma.19G150400 5.0kb upstream 5.0kb upstream 12712 true Chr19: 41079177-41091888 Glycine max
Glyma.19G150400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 41086889-41091888 Glycine max
Glyma.19G150400 5.0kb downstream 5.0kb downstream 12712 true Chr19: 41074177-41086888 Glycine max
Glyma.19G150400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 41074177-41079176 Glycine max
Glyma.19G150400 10.0kb upstream 10.0kb upstream 17712 true Chr19: 41079177-41096888 Glycine max
Glyma.19G150400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 41086889-41096888 Glycine max
Glyma.19G150400 10.0kb downstream 10.0kb downstream 17712 true Chr19: 41069177-41086888 Glycine max
Glyma.19G150400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 41069177-41079176 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308802 5265 Fabidae View MSA
124069294 5270 Rosid View MSA
123740632 5271 Pentapetalae View MSA
122785663 5272 Eudicot View MSA
122048416 5273 Angiosperm View MSA
121348965 5274 Embryophyte View MSA
123424129 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.74612 0.0 20.8799    
cufflinks 8.34557 0.0 22.4163    
cufflinks 10.5687 0.0 28.2065   High
cufflinks 6.57316 0.0 17.86    
cufflinks 5.38005 0.0 14.8559   Low
cufflinks 5.56892 0.0 15.3074    
cufflinks 6.54275 0.0 17.8273    
cufflinks 7.28279 0.0 19.6786    
cufflinks 5.65691 0.0 15.5273    
cufflinks 3.479        
cufflinks 1.824       Low
cufflinks 3.338        
cufflinks 2.676        
cufflinks 2.604        
cufflinks 2.1        
cufflinks 3.653        
cufflinks 1.656       Low
cufflinks 4.561       High
cufflinks 4.103        
cufflinks 4.668       High
cufflinks 1.762       Low
cufflinks 4.463       High
cufflinks 4.122        
cufflinks 2.299        
cufflinks 3.961        
cufflinks 1.674       Low

0 Strain