Gene : Glyma.04G043800 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11945//PTHR11945:SF200 - MADS BOX PROTEIN Genomic Order:  438
Name:  ? Glyma.04G043800 Secondary Identifier:  ? PAC:30490317
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G043800 0.5kb upstream 0.5kb upstream 5810 true Chr04: 3504133-3509942 Glycine max
Glyma.04G043800 0.5kb upstream 0.5kb upstream 500 false Chr04: 3509443-3509942 Glycine max
Glyma.04G043800 0.5kb downstream 0.5kb downstream 5810 true Chr04: 3503633-3509442 Glycine max
Glyma.04G043800 0.5kb downstream 0.5kb downstream 500 false Chr04: 3503633-3504132 Glycine max
Glyma.04G043800 1.0kb upstream 1.0kb upstream 6310 true Chr04: 3504133-3510442 Glycine max
Glyma.04G043800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 3509443-3510442 Glycine max
Glyma.04G043800 1.0kb downstream 1.0kb downstream 6310 true Chr04: 3503133-3509442 Glycine max
Glyma.04G043800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 3503133-3504132 Glycine max
Glyma.04G043800 2.0kb upstream 2.0kb upstream 7310 true Chr04: 3504133-3511442 Glycine max
Glyma.04G043800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 3509443-3511442 Glycine max
Glyma.04G043800 2.0kb downstream 2.0kb downstream 7310 true Chr04: 3502133-3509442 Glycine max
Glyma.04G043800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 3502133-3504132 Glycine max
Glyma.04G043800 5.0kb upstream 5.0kb upstream 10310 true Chr04: 3504133-3514442 Glycine max
Glyma.04G043800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 3509443-3514442 Glycine max
Glyma.04G043800 5.0kb downstream 5.0kb downstream 10310 true Chr04: 3499133-3509442 Glycine max
Glyma.04G043800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 3499133-3504132 Glycine max
Glyma.04G043800 10.0kb upstream 10.0kb upstream 15310 true Chr04: 3504133-3519442 Glycine max
Glyma.04G043800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 3509443-3519442 Glycine max
Glyma.04G043800 10.0kb downstream 10.0kb downstream 15310 true Chr04: 3494133-3509442 Glycine max
Glyma.04G043800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3494133-3504132 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310238 5265 Fabidae View MSA
124069767 5270 Rosid View MSA
123753647 5271 Pentapetalae View MSA
122786853 5272 Eudicot View MSA
122050633 5273 Angiosperm View MSA
121350455 5274 Embryophyte View MSA
123427239 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101662 0.0 0.402726 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0313069 0.0 0.131054 Low  
cufflinks 0.820636 0.0 2.94556    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.188668 0.0 0.729938 Low  
cufflinks 3.45705 0.0 10.5923   High
cufflinks 0.0123064 0.0 0.0556983 Low Low
cufflinks 0.012598 0.0 0.0569805 Low Low
cufflinks 0.005     Low  
cufflinks 0.01     Low  
cufflinks 0.048     Low High
cufflinks 0.006     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.008     Low  
cufflinks 0.163       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.004     Low  
cufflinks 0.004     Low  
cufflinks 0.06     Low High

0 Strain