Gene : Glyma.04G049500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11850:SF64 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 Genomic Order:  495
Name:  ? Glyma.04G049500 Secondary Identifier:  ? PAC:30487791
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G049500 0.5kb upstream 0.5kb upstream 6040 true Chr04: 4009958-4015997 Glycine max
Glyma.04G049500 0.5kb upstream 0.5kb upstream 500 false Chr04: 4015498-4015997 Glycine max
Glyma.04G049500 0.5kb downstream 0.5kb downstream 6040 true Chr04: 4009458-4015497 Glycine max
Glyma.04G049500 0.5kb downstream 0.5kb downstream 500 false Chr04: 4009458-4009957 Glycine max
Glyma.04G049500 1.0kb upstream 1.0kb upstream 6540 true Chr04: 4009958-4016497 Glycine max
Glyma.04G049500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4015498-4016497 Glycine max
Glyma.04G049500 1.0kb downstream 1.0kb downstream 6540 true Chr04: 4008958-4015497 Glycine max
Glyma.04G049500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4008958-4009957 Glycine max
Glyma.04G049500 2.0kb upstream 2.0kb upstream 7540 true Chr04: 4009958-4017497 Glycine max
Glyma.04G049500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4015498-4017497 Glycine max
Glyma.04G049500 2.0kb downstream 2.0kb downstream 7540 true Chr04: 4007958-4015497 Glycine max
Glyma.04G049500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4007958-4009957 Glycine max
Glyma.04G049500 5.0kb upstream 5.0kb upstream 10540 true Chr04: 4009958-4020497 Glycine max
Glyma.04G049500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4015498-4020497 Glycine max
Glyma.04G049500 5.0kb downstream 5.0kb downstream 10540 true Chr04: 4004958-4015497 Glycine max
Glyma.04G049500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4004958-4009957 Glycine max
Glyma.04G049500 10.0kb upstream 10.0kb upstream 15540 true Chr04: 4009958-4025497 Glycine max
Glyma.04G049500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4015498-4025497 Glycine max
Glyma.04G049500 10.0kb downstream 10.0kb downstream 15540 true Chr04: 3999958-4015497 Glycine max
Glyma.04G049500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3999958-4009957 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122249151 5265 Fabidae Singleton cluster - no MSA
124072037 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.28368 0.0 23.2673    
cufflinks 2.78681 0.0 16.3204    
cufflinks 0.337264 0.0 2.33822    
cufflinks 0.765429 0.0 5.84878    
cufflinks 0.354557 0.0 2.42885    
cufflinks 0.113816 0.0 0.961812 Low Low
cufflinks 23.1462 0.0 105.074 High High
cufflinks 1.15331 0.0 7.27261    
cufflinks 1.109       High
cufflinks 0.001     Low Low
cufflinks 0.416       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055        
cufflinks 0.003     Low  
cufflinks 0.002     Low  
cufflinks 0.376       High
cufflinks 0.312       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain