Gene : Glyma.04G054300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22807:SF4 - NOL1/NOP2/SUN DOMAIN FAMILY MEMBER 5B-RELATED Genomic Order:  543
Name:  ? Glyma.04G054300 Secondary Identifier:  ? PAC:30487530
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G054300 0.5kb upstream 0.5kb upstream 5910 true Chr04: 4408924-4414833 Glycine max
Glyma.04G054300 0.5kb upstream 0.5kb upstream 500 false Chr04: 4408924-4409423 Glycine max
Glyma.04G054300 0.5kb downstream 0.5kb downstream 5910 true Chr04: 4409424-4415333 Glycine max
Glyma.04G054300 0.5kb downstream 0.5kb downstream 500 false Chr04: 4414834-4415333 Glycine max
Glyma.04G054300 1.0kb upstream 1.0kb upstream 6410 true Chr04: 4408424-4414833 Glycine max
Glyma.04G054300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4408424-4409423 Glycine max
Glyma.04G054300 1.0kb downstream 1.0kb downstream 6410 true Chr04: 4409424-4415833 Glycine max
Glyma.04G054300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4414834-4415833 Glycine max
Glyma.04G054300 2.0kb upstream 2.0kb upstream 7410 true Chr04: 4407424-4414833 Glycine max
Glyma.04G054300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4407424-4409423 Glycine max
Glyma.04G054300 2.0kb downstream 2.0kb downstream 7410 true Chr04: 4409424-4416833 Glycine max
Glyma.04G054300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4414834-4416833 Glycine max
Glyma.04G054300 5.0kb upstream 5.0kb upstream 10410 true Chr04: 4404424-4414833 Glycine max
Glyma.04G054300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4404424-4409423 Glycine max
Glyma.04G054300 5.0kb downstream 5.0kb downstream 10410 true Chr04: 4409424-4419833 Glycine max
Glyma.04G054300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4414834-4419833 Glycine max
Glyma.04G054300 10.0kb upstream 10.0kb upstream 15410 true Chr04: 4399424-4414833 Glycine max
Glyma.04G054300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4399424-4409423 Glycine max
Glyma.04G054300 10.0kb downstream 10.0kb downstream 15410 true Chr04: 4409424-4424833 Glycine max
Glyma.04G054300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4414834-4424833 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299949 5265 Fabidae View MSA
124061219 5270 Rosid View MSA
123738087 5271 Pentapetalae View MSA
122791189 5272 Eudicot View MSA
122043756 5273 Angiosperm View MSA
121346877 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.84138 0.0 23.59   High
cufflinks 5.00936 0.0 21.4812    
cufflinks 2.776 0.0 9.12049   Low
cufflinks 3.12651 0.0 9.86622    
cufflinks 5.07719 0.0 21.6887    
cufflinks 2.81916 0.0 9.27743   Low
cufflinks 3.27763 0.0 16.2117    
cufflinks 4.32216 0.0 19.2017    
cufflinks 3.96288 0.0 15.5495    
cufflinks 0.408        
cufflinks 0.081       Low
cufflinks 0.683        
cufflinks 1.081       High
cufflinks 1.461       High
cufflinks 0.175        
cufflinks 0.45        
cufflinks 0.298        
cufflinks 0.631        
cufflinks 0.955       High
cufflinks 0.232        
cufflinks 0.21        
cufflinks 0.341        
cufflinks 0.702        
cufflinks 0.091       Low
cufflinks 0.37        
cufflinks 0.27        

0 Strain