Gene : Glyma.19G153400 G. max Wm82.a2.v1
Defline:  (1 of 24) KOG1987 - Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains Genomic Order:  1534
Name:  ? Glyma.19G153400 Secondary Identifier:  ? PAC:30513533
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G153400 0.5kb upstream 0.5kb upstream 5323 true Chr19: 41368514-41373836 Glycine max
Glyma.19G153400 0.5kb upstream 0.5kb upstream 500 false Chr19: 41368514-41369013 Glycine max
Glyma.19G153400 0.5kb downstream 0.5kb downstream 5323 true Chr19: 41369014-41374336 Glycine max
Glyma.19G153400 0.5kb downstream 0.5kb downstream 500 false Chr19: 41373837-41374336 Glycine max
Glyma.19G153400 1.0kb upstream 1.0kb upstream 5823 true Chr19: 41368014-41373836 Glycine max
Glyma.19G153400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 41368014-41369013 Glycine max
Glyma.19G153400 1.0kb downstream 1.0kb downstream 5823 true Chr19: 41369014-41374836 Glycine max
Glyma.19G153400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 41373837-41374836 Glycine max
Glyma.19G153400 2.0kb upstream 2.0kb upstream 6823 true Chr19: 41367014-41373836 Glycine max
Glyma.19G153400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 41367014-41369013 Glycine max
Glyma.19G153400 2.0kb downstream 2.0kb downstream 6823 true Chr19: 41369014-41375836 Glycine max
Glyma.19G153400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 41373837-41375836 Glycine max
Glyma.19G153400 5.0kb upstream 5.0kb upstream 9823 true Chr19: 41364014-41373836 Glycine max
Glyma.19G153400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 41364014-41369013 Glycine max
Glyma.19G153400 5.0kb downstream 5.0kb downstream 9823 true Chr19: 41369014-41378836 Glycine max
Glyma.19G153400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 41373837-41378836 Glycine max
Glyma.19G153400 10.0kb upstream 10.0kb upstream 14823 true Chr19: 41359014-41373836 Glycine max
Glyma.19G153400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 41359014-41369013 Glycine max
Glyma.19G153400 10.0kb downstream 10.0kb downstream 14823 true Chr19: 41369014-41383836 Glycine max
Glyma.19G153400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 41373837-41383836 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040960 5273 Angiosperm View MSA
122309857 5265 Fabidae View MSA
124064148 5270 Rosid View MSA
123743633 5271 Pentapetalae View MSA
122791318 5272 Eudicot View MSA
121348457 5274 Embryophyte View MSA
123428082 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.6664 0.0 44.4698    
cufflinks 15.2922 0.0 40.8452   Low
cufflinks 23.0364 0.0 61.6952 High High
cufflinks 16.0353 0.0 42.7993    
cufflinks 16.9358 0.0 45.184    
cufflinks 21.0724 0.0 56.3267   High
cufflinks 17.3522 0.0 46.2949    
cufflinks 18.6061 0.0 49.6447    
cufflinks 16.7435 0.0 44.6747    
cufflinks 5.676       Low
cufflinks 7.099     High  
cufflinks 7.546     High  
cufflinks 6.494        
cufflinks 5.155       Low
cufflinks 5.969     High  
cufflinks 6.7        
cufflinks 7.839     High  
cufflinks 5.785       Low
cufflinks 7.365        
cufflinks 6.605        
cufflinks 7.936     High  
cufflinks 6.67        
cufflinks 7.465        
cufflinks 8.472     High High
cufflinks 5.958        
cufflinks 9.309     High High

0 Strain