Gene : Glyma.04G055200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31618:SF3 - MECHANOSENSITIVE ION CHANNEL PROTEIN 10-RELATED Genomic Order:  552
Name:  ? Glyma.04G055200 Secondary Identifier:  ? PAC:30490336
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G055200 0.5kb upstream 0.5kb upstream 4486 true Chr04: 4456749-4461234 Glycine max
Glyma.04G055200 0.5kb upstream 0.5kb upstream 500 false Chr04: 4456749-4457248 Glycine max
Glyma.04G055200 0.5kb downstream 0.5kb downstream 4486 true Chr04: 4457249-4461734 Glycine max
Glyma.04G055200 0.5kb downstream 0.5kb downstream 500 false Chr04: 4461235-4461734 Glycine max
Glyma.04G055200 1.0kb upstream 1.0kb upstream 4986 true Chr04: 4456249-4461234 Glycine max
Glyma.04G055200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4456249-4457248 Glycine max
Glyma.04G055200 1.0kb downstream 1.0kb downstream 4986 true Chr04: 4457249-4462234 Glycine max
Glyma.04G055200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4461235-4462234 Glycine max
Glyma.04G055200 2.0kb upstream 2.0kb upstream 5986 true Chr04: 4455249-4461234 Glycine max
Glyma.04G055200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4455249-4457248 Glycine max
Glyma.04G055200 2.0kb downstream 2.0kb downstream 5986 true Chr04: 4457249-4463234 Glycine max
Glyma.04G055200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4461235-4463234 Glycine max
Glyma.04G055200 5.0kb upstream 5.0kb upstream 8986 true Chr04: 4452249-4461234 Glycine max
Glyma.04G055200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4452249-4457248 Glycine max
Glyma.04G055200 5.0kb downstream 5.0kb downstream 8986 true Chr04: 4457249-4466234 Glycine max
Glyma.04G055200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4461235-4466234 Glycine max
Glyma.04G055200 10.0kb upstream 10.0kb upstream 13986 true Chr04: 4447249-4461234 Glycine max
Glyma.04G055200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4447249-4457248 Glycine max
Glyma.04G055200 10.0kb downstream 10.0kb downstream 13986 true Chr04: 4457249-4471234 Glycine max
Glyma.04G055200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4461235-4471234 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041489 5273 Angiosperm View MSA
122300872 5265 Fabidae View MSA
124069655 5270 Rosid View MSA
123753249 5271 Pentapetalae View MSA
122794299 5272 Eudicot View MSA
121309858 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53926 0.0 6.74712    
cufflinks 1.47215 0.0 6.67187    
cufflinks 0.683137 0.0 3.71824   Low
cufflinks 2.91741 0.0 10.5585    
cufflinks 1.96701 0.0 8.07414    
cufflinks 3.29814 0.0 11.5977    
cufflinks 3.31355 0.0 11.5702    
cufflinks 1.57701 0.0 5.35665    
cufflinks 3.16359 0.0 13.0368    
cufflinks 0.803        
cufflinks 1.464        
cufflinks 0.681        
cufflinks 1.676        
cufflinks 1.295        
cufflinks 4.862       High
cufflinks 0.934        
cufflinks 0.777        
cufflinks 0.739        
cufflinks 1.006        
cufflinks 0.419       Low
cufflinks 2.13       High
cufflinks 0.512       Low
cufflinks 0.539        
cufflinks 0.524        
cufflinks 0.585        
cufflinks 1.886       High

0 Strain