Gene : Glyma.04G018100 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR12858 - RIBOSOME BIOGENESIS PROTEIN Genomic Order:  181
Name:  ? Glyma.04G018100 Secondary Identifier:  ? PAC:30487528
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G018100 0.5kb upstream 0.5kb upstream 13249 true Chr04: 1407616-1420864 Glycine max
Glyma.04G018100 0.5kb upstream 0.5kb upstream 500 false Chr04: 1407616-1408115 Glycine max
Glyma.04G018100 0.5kb downstream 0.5kb downstream 13249 true Chr04: 1408116-1421364 Glycine max
Glyma.04G018100 0.5kb downstream 0.5kb downstream 500 false Chr04: 1420865-1421364 Glycine max
Glyma.04G018100 1.0kb upstream 1.0kb upstream 13749 true Chr04: 1407116-1420864 Glycine max
Glyma.04G018100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1407116-1408115 Glycine max
Glyma.04G018100 1.0kb downstream 1.0kb downstream 13749 true Chr04: 1408116-1421864 Glycine max
Glyma.04G018100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1420865-1421864 Glycine max
Glyma.04G018100 2.0kb upstream 2.0kb upstream 14749 true Chr04: 1406116-1420864 Glycine max
Glyma.04G018100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1406116-1408115 Glycine max
Glyma.04G018100 2.0kb downstream 2.0kb downstream 14749 true Chr04: 1408116-1422864 Glycine max
Glyma.04G018100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1420865-1422864 Glycine max
Glyma.04G018100 5.0kb upstream 5.0kb upstream 17749 true Chr04: 1403116-1420864 Glycine max
Glyma.04G018100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1403116-1408115 Glycine max
Glyma.04G018100 5.0kb downstream 5.0kb downstream 17749 true Chr04: 1408116-1425864 Glycine max
Glyma.04G018100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1420865-1425864 Glycine max
Glyma.04G018100 10.0kb upstream 10.0kb upstream 22749 true Chr04: 1398116-1420864 Glycine max
Glyma.04G018100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1398116-1408115 Glycine max
Glyma.04G018100 10.0kb downstream 10.0kb downstream 22749 true Chr04: 1408116-1430864 Glycine max
Glyma.04G018100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1420865-1430864 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299777 5265 Fabidae View MSA
124066682 5270 Rosid View MSA
123739487 5271 Pentapetalae View MSA
122792975 5272 Eudicot View MSA
122044889 5273 Angiosperm View MSA
121347720 5274 Embryophyte View MSA
123428215 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.1488 0.0 32.438    
cufflinks 9.25349 0.0 24.713    
cufflinks 6.86369 0.0 18.467   Low
cufflinks 9.70204 0.0 25.8933    
cufflinks 12.3681 0.0 33.0287    
cufflinks 5.97352 0.0 16.2106   Low
cufflinks 15.018 0.0 40.275   High
cufflinks 8.83928 0.0 23.6224    
cufflinks 12.0772 0.0 32.247    
cufflinks 1.696        
cufflinks 1.561       Low
cufflinks 2.712        
cufflinks 3.402       High
cufflinks 4.482       High
cufflinks 2.355        
cufflinks 2.007        
cufflinks 1.871        
cufflinks 2.472        
cufflinks 3.093       High
cufflinks 1.807        
cufflinks 2.151        
cufflinks 1.774        
cufflinks 2.092        
cufflinks 1.576       Low
cufflinks 1.987        
cufflinks 2.1        

0 Strain