Gene : Glyma.19G145500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR16052:SF0 - TBCC DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1455
Name:  ? Glyma.19G145500 Secondary Identifier:  ? PAC:30511332
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G145500 0.5kb upstream 0.5kb upstream 9982 true Chr19: 40638140-40648121 Glycine max
Glyma.19G145500 0.5kb upstream 0.5kb upstream 500 false Chr19: 40638140-40638639 Glycine max
Glyma.19G145500 0.5kb downstream 0.5kb downstream 9982 true Chr19: 40638640-40648621 Glycine max
Glyma.19G145500 0.5kb downstream 0.5kb downstream 500 false Chr19: 40648122-40648621 Glycine max
Glyma.19G145500 1.0kb upstream 1.0kb upstream 10482 true Chr19: 40637640-40648121 Glycine max
Glyma.19G145500 1.0kb upstream 1.0kb upstream 1000 false Chr19: 40637640-40638639 Glycine max
Glyma.19G145500 1.0kb downstream 1.0kb downstream 10482 true Chr19: 40638640-40649121 Glycine max
Glyma.19G145500 1.0kb downstream 1.0kb downstream 1000 false Chr19: 40648122-40649121 Glycine max
Glyma.19G145500 2.0kb upstream 2.0kb upstream 11482 true Chr19: 40636640-40648121 Glycine max
Glyma.19G145500 2.0kb upstream 2.0kb upstream 2000 false Chr19: 40636640-40638639 Glycine max
Glyma.19G145500 2.0kb downstream 2.0kb downstream 11482 true Chr19: 40638640-40650121 Glycine max
Glyma.19G145500 2.0kb downstream 2.0kb downstream 2000 false Chr19: 40648122-40650121 Glycine max
Glyma.19G145500 5.0kb upstream 5.0kb upstream 14482 true Chr19: 40633640-40648121 Glycine max
Glyma.19G145500 5.0kb upstream 5.0kb upstream 5000 false Chr19: 40633640-40638639 Glycine max
Glyma.19G145500 5.0kb downstream 5.0kb downstream 14482 true Chr19: 40638640-40653121 Glycine max
Glyma.19G145500 5.0kb downstream 5.0kb downstream 5000 false Chr19: 40648122-40653121 Glycine max
Glyma.19G145500 10.0kb upstream 10.0kb upstream 19482 true Chr19: 40628640-40648121 Glycine max
Glyma.19G145500 10.0kb upstream 10.0kb upstream 10000 false Chr19: 40628640-40638639 Glycine max
Glyma.19G145500 10.0kb downstream 10.0kb downstream 19482 true Chr19: 40638640-40658121 Glycine max
Glyma.19G145500 10.0kb downstream 10.0kb downstream 10000 false Chr19: 40648122-40658121 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309249 5265 Fabidae View MSA
124060607 5270 Rosid View MSA
123737607 5271 Pentapetalae View MSA
122797393 5272 Eudicot View MSA
122043018 5273 Angiosperm View MSA
121349470 5274 Embryophyte View MSA
123427558 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.1419 0.0 35.1222    
cufflinks 10.4022 0.0 28.0079   Low
cufflinks 14.9566 0.0 39.9112    
cufflinks 13.911 0.0 37.147    
cufflinks 18.4582 0.0 49.3264   High
cufflinks 18.1438 0.0 48.4617   High
cufflinks 13.6832 0.0 36.543    
cufflinks 16.9451 0.0 45.219    
cufflinks 14.8188 0.0 39.5406    
cufflinks 2.621        
cufflinks 3.067        
cufflinks 2.277        
cufflinks 3.336       High
cufflinks 3.798       High
cufflinks 1.867       Low
cufflinks 2.661        
cufflinks 2.28        
cufflinks 2.509        
cufflinks 2.286        
cufflinks 2.625        
cufflinks 3.055        
cufflinks 2.711        
cufflinks 2.133       Low
cufflinks 3.899       High
cufflinks 2.607        
cufflinks 3.194        

0 Strain