Gene : Glyma.04G030500 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  305
Name:  ? Glyma.04G030500 Secondary Identifier:  ? PAC:30491015
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARGSYNBSUB-PWY Glycine max pathologic  
Gmax ARGSYN-PWY Glycine max pathologic  
Gmax CITRULBIO-PWY Glycine max pathologic  
Gmax CITRULLINE-DEG-PWY Glycine max pathologic  
Gmax PWY-4984 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G030500 0.5kb upstream 0.5kb upstream 7073 true Chr04: 2481492-2488564 Glycine max
Glyma.04G030500 0.5kb upstream 0.5kb upstream 500 false Chr04: 2481492-2481991 Glycine max
Glyma.04G030500 0.5kb downstream 0.5kb downstream 7073 true Chr04: 2481992-2489064 Glycine max
Glyma.04G030500 0.5kb downstream 0.5kb downstream 500 false Chr04: 2488565-2489064 Glycine max
Glyma.04G030500 1.0kb upstream 1.0kb upstream 7573 true Chr04: 2480992-2488564 Glycine max
Glyma.04G030500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2480992-2481991 Glycine max
Glyma.04G030500 1.0kb downstream 1.0kb downstream 7573 true Chr04: 2481992-2489564 Glycine max
Glyma.04G030500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2488565-2489564 Glycine max
Glyma.04G030500 2.0kb upstream 2.0kb upstream 8573 true Chr04: 2479992-2488564 Glycine max
Glyma.04G030500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2479992-2481991 Glycine max
Glyma.04G030500 2.0kb downstream 2.0kb downstream 8573 true Chr04: 2481992-2490564 Glycine max
Glyma.04G030500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2488565-2490564 Glycine max
Glyma.04G030500 5.0kb upstream 5.0kb upstream 11573 true Chr04: 2476992-2488564 Glycine max
Glyma.04G030500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2476992-2481991 Glycine max
Glyma.04G030500 5.0kb downstream 5.0kb downstream 11573 true Chr04: 2481992-2493564 Glycine max
Glyma.04G030500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2488565-2493564 Glycine max
Glyma.04G030500 10.0kb upstream 10.0kb upstream 16573 true Chr04: 2471992-2488564 Glycine max
Glyma.04G030500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2471992-2481991 Glycine max
Glyma.04G030500 10.0kb downstream 10.0kb downstream 16573 true Chr04: 2481992-2498564 Glycine max
Glyma.04G030500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2488565-2498564 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306877 5265 Fabidae View MSA
124068629 5270 Rosid View MSA
123736976 5271 Pentapetalae View MSA
122787582 5272 Eudicot View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.171 0.0 43.3792    
cufflinks 22.8731 0.0 61.0225 High  
cufflinks 8.44155 0.0 23.615   Low
cufflinks 24.9043 0.0 66.4804 High  
cufflinks 24.9793 0.0 66.6886 High  
cufflinks 17.0269 0.0 45.5891    
cufflinks 47.3852 0.0 130.233 High High
cufflinks 20.8089 0.0 55.5365    
cufflinks 22.005 0.0 58.7082 High  
cufflinks 4.433        
cufflinks 0.502       Low
cufflinks 3.303        
cufflinks 4.735        
cufflinks 6.439       High
cufflinks 1.284        
cufflinks 4.572        
cufflinks 1.172        
cufflinks 4.492        
cufflinks 5.083        
cufflinks 3.27        
cufflinks 0.883       Low
cufflinks 3.608        
cufflinks 4.783        
cufflinks 0.834       Low
cufflinks 3.74        
cufflinks 1.186        

0 Strain