Gene : Glyma.04G189200 G. max Wm82.a2.v1
Defline:  (1 of 3) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1892
Name:  ? Glyma.04G189200 Secondary Identifier:  ? PAC:30488381
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6689 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G189200 0.5kb upstream 0.5kb upstream 2645 true Chr04: 46020865-46023509 Glycine max
Glyma.04G189200 0.5kb upstream 0.5kb upstream 500 false Chr04: 46023010-46023509 Glycine max
Glyma.04G189200 0.5kb downstream 0.5kb downstream 2645 true Chr04: 46020365-46023009 Glycine max
Glyma.04G189200 0.5kb downstream 0.5kb downstream 500 false Chr04: 46020365-46020864 Glycine max
Glyma.04G189200 1.0kb upstream 1.0kb upstream 3145 true Chr04: 46020865-46024009 Glycine max
Glyma.04G189200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 46023010-46024009 Glycine max
Glyma.04G189200 1.0kb downstream 1.0kb downstream 3145 true Chr04: 46019865-46023009 Glycine max
Glyma.04G189200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 46019865-46020864 Glycine max
Glyma.04G189200 2.0kb upstream 2.0kb upstream 4145 true Chr04: 46020865-46025009 Glycine max
Glyma.04G189200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 46023010-46025009 Glycine max
Glyma.04G189200 2.0kb downstream 2.0kb downstream 4145 true Chr04: 46018865-46023009 Glycine max
Glyma.04G189200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 46018865-46020864 Glycine max
Glyma.04G189200 5.0kb upstream 5.0kb upstream 7145 true Chr04: 46020865-46028009 Glycine max
Glyma.04G189200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 46023010-46028009 Glycine max
Glyma.04G189200 5.0kb downstream 5.0kb downstream 7145 true Chr04: 46015865-46023009 Glycine max
Glyma.04G189200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 46015865-46020864 Glycine max
Glyma.04G189200 10.0kb upstream 10.0kb upstream 12145 true Chr04: 46020865-46033009 Glycine max
Glyma.04G189200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 46023010-46033009 Glycine max
Glyma.04G189200 10.0kb downstream 10.0kb downstream 12145 true Chr04: 46010865-46023009 Glycine max
Glyma.04G189200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 46010865-46020864 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122306771 5265 Fabidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.28952 0.0 25.5907   High
cufflinks 4.45558 0.0 18.1597    
cufflinks 3.79251 0.0 16.229    
cufflinks 3.82666 0.0 16.2824    
cufflinks 3.07774 0.0 14.1097   Low
cufflinks 3.064 0.0 14.4271   Low
cufflinks 5.13254 0.0 20.2025    
cufflinks 3.21289 0.0 14.6798    
cufflinks 4.92054 0.0 19.9674    
cufflinks 1.06        
cufflinks 0.893       Low
cufflinks 2.215        
cufflinks 1.592        
cufflinks 1.68        
cufflinks 0.987       Low
cufflinks 2.459        
cufflinks 0.908       Low
cufflinks 2.038        
cufflinks 1.903        
cufflinks 2.538       High
cufflinks 0.86       Low
cufflinks 2.705       High
cufflinks 2.673       High
cufflinks 1.023        
cufflinks 2.716       High
cufflinks 1.168        

0 Strain