Gene : Glyma.04G216000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11405:SF37 - CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN, CHLOROPLASTIC Genomic Order:  2160
Name:  ? Glyma.04G216000 Secondary Identifier:  ? PAC:30490157
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARGSYNBSUB-PWY Glycine max pathologic  
Gmax ARGSYN-PWY Glycine max pathologic  
Gmax CITRULBIO-PWY Glycine max pathologic  
Gmax GLUTAMINDEG-PWY Glycine max pathologic  
Gmax PWY0-162 Glycine max pathologic  
Gmax PWY-4984 Glycine max pathologic  
Gmax PWY-5686 Glycine max pathologic  
Gmax PWY-7211 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G216000 0.5kb upstream 0.5kb upstream 3950 true Chr04: 48723367-48727316 Glycine max
Glyma.04G216000 0.5kb upstream 0.5kb upstream 500 false Chr04: 48726817-48727316 Glycine max
Glyma.04G216000 0.5kb downstream 0.5kb downstream 3950 true Chr04: 48722867-48726816 Glycine max
Glyma.04G216000 0.5kb downstream 0.5kb downstream 500 false Chr04: 48722867-48723366 Glycine max
Glyma.04G216000 1.0kb upstream 1.0kb upstream 4450 true Chr04: 48723367-48727816 Glycine max
Glyma.04G216000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 48726817-48727816 Glycine max
Glyma.04G216000 1.0kb downstream 1.0kb downstream 4450 true Chr04: 48722367-48726816 Glycine max
Glyma.04G216000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 48722367-48723366 Glycine max
Glyma.04G216000 2.0kb upstream 2.0kb upstream 5450 true Chr04: 48723367-48728816 Glycine max
Glyma.04G216000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 48726817-48728816 Glycine max
Glyma.04G216000 2.0kb downstream 2.0kb downstream 5450 true Chr04: 48721367-48726816 Glycine max
Glyma.04G216000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 48721367-48723366 Glycine max
Glyma.04G216000 5.0kb upstream 5.0kb upstream 8450 true Chr04: 48723367-48731816 Glycine max
Glyma.04G216000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 48726817-48731816 Glycine max
Glyma.04G216000 5.0kb downstream 5.0kb downstream 8450 true Chr04: 48718367-48726816 Glycine max
Glyma.04G216000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 48718367-48723366 Glycine max
Glyma.04G216000 10.0kb upstream 10.0kb upstream 13450 true Chr04: 48723367-48736816 Glycine max
Glyma.04G216000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 48726817-48736816 Glycine max
Glyma.04G216000 10.0kb downstream 10.0kb downstream 13450 true Chr04: 48713367-48726816 Glycine max
Glyma.04G216000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 48713367-48723366 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313354 5265 Fabidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.9552 0.0 86.5637 High  
cufflinks 26.2592 0.0 70.4997 High  
cufflinks 14.7403 0.0 39.4188    
cufflinks 38.2442 0.0 104.958 High  
cufflinks 23.3455 0.0 62.4427 High  
cufflinks 15.4443 0.0 41.2685    
cufflinks 133.143 0.0 436.826 High High
cufflinks 20.881 0.0 55.7521    
cufflinks 18.1764 0.0 48.4933    
cufflinks 9.697     High  
cufflinks 2.497       Low
cufflinks 11.588     High  
cufflinks 15.382     High High
cufflinks 18.417     High High
cufflinks 5.282     High  
cufflinks 9.703     High  
cufflinks 5.948        
cufflinks 11.802     High  
cufflinks 14.753     High High
cufflinks 8.726     High  
cufflinks 4.341       Low
cufflinks 9.521     High  
cufflinks 14.041     High  
cufflinks 3.502       Low
cufflinks 9.385     High  
cufflinks 4.404       Low

0 Strain