Gene : Glyma.04G228400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33231:SF1 - 30S RIBOSOMAL PROTEIN-RELATED Genomic Order:  2284
Name:  ? Glyma.04G228400 Secondary Identifier:  ? PAC:30487964
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G228400 0.5kb upstream 0.5kb upstream 2605 true Chr04: 49767220-49769824 Glycine max
Glyma.04G228400 0.5kb upstream 0.5kb upstream 500 false Chr04: 49767220-49767719 Glycine max
Glyma.04G228400 0.5kb downstream 0.5kb downstream 2605 true Chr04: 49767720-49770324 Glycine max
Glyma.04G228400 0.5kb downstream 0.5kb downstream 500 false Chr04: 49769825-49770324 Glycine max
Glyma.04G228400 1.0kb upstream 1.0kb upstream 3105 true Chr04: 49766720-49769824 Glycine max
Glyma.04G228400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 49766720-49767719 Glycine max
Glyma.04G228400 1.0kb downstream 1.0kb downstream 3105 true Chr04: 49767720-49770824 Glycine max
Glyma.04G228400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 49769825-49770824 Glycine max
Glyma.04G228400 2.0kb upstream 2.0kb upstream 4105 true Chr04: 49765720-49769824 Glycine max
Glyma.04G228400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 49765720-49767719 Glycine max
Glyma.04G228400 2.0kb downstream 2.0kb downstream 4105 true Chr04: 49767720-49771824 Glycine max
Glyma.04G228400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 49769825-49771824 Glycine max
Glyma.04G228400 5.0kb upstream 5.0kb upstream 7105 true Chr04: 49762720-49769824 Glycine max
Glyma.04G228400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 49762720-49767719 Glycine max
Glyma.04G228400 5.0kb downstream 5.0kb downstream 7105 true Chr04: 49767720-49774824 Glycine max
Glyma.04G228400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 49769825-49774824 Glycine max
Glyma.04G228400 10.0kb upstream 10.0kb upstream 12105 true Chr04: 49757720-49769824 Glycine max
Glyma.04G228400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 49757720-49767719 Glycine max
Glyma.04G228400 10.0kb downstream 10.0kb downstream 12105 true Chr04: 49767720-49779824 Glycine max
Glyma.04G228400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 49769825-49779824 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311273 5265 Fabidae View MSA
124068833 5270 Rosid View MSA
123738015 5271 Pentapetalae View MSA
122786116 5272 Eudicot View MSA
122044034 5273 Angiosperm View MSA
121345807 5274 Embryophyte View MSA
123423894 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.3603 0.0 170.39 High High
cufflinks 30.1072 0.0 80.7519 High  
cufflinks 11.0296 0.0 30.0717    
cufflinks 20.6578 0.0 55.1194 High  
cufflinks 8.49279 0.0 23.7091    
cufflinks 2.76116 0.0 8.92624   Low
cufflinks 26.3698 0.0 70.4859 High  
cufflinks 7.70289 0.0 21.6803    
cufflinks 5.57695 0.0 16.3193    
cufflinks 8.627     High  
cufflinks 5.895     High  
cufflinks 15.473     High  
cufflinks 1.224       Low
cufflinks 1.912       Low
cufflinks 36.671     High  
cufflinks 99.194     High High
cufflinks 0.697       Low
cufflinks 17.388     High  
cufflinks 19.117     High  
cufflinks 221.763     High High
cufflinks 6.96     High  
cufflinks 115.788     High High
cufflinks 34.802     High  
cufflinks 5.707        
cufflinks 165.126     High High
cufflinks 2.401       Low

0 Strain