Gene : Glyma.04G249400 G. max Wm82.a2.v1
Defline:  (1 of 4) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  2494
Name:  ? Glyma.04G249400 Secondary Identifier:  ? PAC:30488253
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5068 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G249400 0.5kb upstream 0.5kb upstream 5010 true Chr04: 51609783-51614792 Glycine max
Glyma.04G249400 0.5kb upstream 0.5kb upstream 500 false Chr04: 51614293-51614792 Glycine max
Glyma.04G249400 0.5kb downstream 0.5kb downstream 5010 true Chr04: 51609283-51614292 Glycine max
Glyma.04G249400 0.5kb downstream 0.5kb downstream 500 false Chr04: 51609283-51609782 Glycine max
Glyma.04G249400 1.0kb upstream 1.0kb upstream 5510 true Chr04: 51609783-51615292 Glycine max
Glyma.04G249400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 51614293-51615292 Glycine max
Glyma.04G249400 1.0kb downstream 1.0kb downstream 5510 true Chr04: 51608783-51614292 Glycine max
Glyma.04G249400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 51608783-51609782 Glycine max
Glyma.04G249400 2.0kb upstream 2.0kb upstream 6510 true Chr04: 51609783-51616292 Glycine max
Glyma.04G249400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 51614293-51616292 Glycine max
Glyma.04G249400 2.0kb downstream 2.0kb downstream 6510 true Chr04: 51607783-51614292 Glycine max
Glyma.04G249400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 51607783-51609782 Glycine max
Glyma.04G249400 5.0kb upstream 5.0kb upstream 9510 true Chr04: 51609783-51619292 Glycine max
Glyma.04G249400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 51614293-51619292 Glycine max
Glyma.04G249400 5.0kb downstream 5.0kb downstream 9510 true Chr04: 51604783-51614292 Glycine max
Glyma.04G249400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 51604783-51609782 Glycine max
Glyma.04G249400 10.0kb upstream 10.0kb upstream 14510 true Chr04: 51609783-51624292 Glycine max
Glyma.04G249400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 51614293-51624292 Glycine max
Glyma.04G249400 10.0kb downstream 10.0kb downstream 14510 true Chr04: 51599783-51614292 Glycine max
Glyma.04G249400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 51599783-51609782 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309423 5265 Fabidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.3622 0.0 107.74 High High
cufflinks 13.3527 0.0 35.6369    
cufflinks 46.1589 0.0 132.973 High High
cufflinks 11.2735 0.0 30.1632    
cufflinks 2.52193 0.0 7.78539   Low
cufflinks 3.2476 0.0 9.66236    
cufflinks 11.0337 0.0 29.5485    
cufflinks 8.97238 0.0 24.1968    
cufflinks 2.07455 0.0 6.57538   Low
cufflinks 8.922     High  
cufflinks 3.142        
cufflinks 15.305     High  
cufflinks 0.645       Low
cufflinks 0.623       Low
cufflinks 4.448        
cufflinks 37.932     High High
cufflinks 0.836       Low
cufflinks 6.111        
cufflinks 11.928     High  
cufflinks 50.624     High High
cufflinks 2.272        
cufflinks 50.215     High High
cufflinks 18.906     High  
cufflinks 5.344        
cufflinks 54.325     High High
cufflinks 2.186        

0 Strain