Gene : Glyma.04G238200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  2382
Name:  ? Glyma.04G238200 Secondary Identifier:  ? PAC:30487755
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G238200 0.5kb upstream 0.5kb upstream 3340 true Chr04: 50676984-50680323 Glycine max
Glyma.04G238200 0.5kb upstream 0.5kb upstream 500 false Chr04: 50679824-50680323 Glycine max
Glyma.04G238200 0.5kb downstream 0.5kb downstream 3340 true Chr04: 50676484-50679823 Glycine max
Glyma.04G238200 0.5kb downstream 0.5kb downstream 500 false Chr04: 50676484-50676983 Glycine max
Glyma.04G238200 1.0kb upstream 1.0kb upstream 3840 true Chr04: 50676984-50680823 Glycine max
Glyma.04G238200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 50679824-50680823 Glycine max
Glyma.04G238200 1.0kb downstream 1.0kb downstream 3840 true Chr04: 50675984-50679823 Glycine max
Glyma.04G238200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 50675984-50676983 Glycine max
Glyma.04G238200 2.0kb upstream 2.0kb upstream 4840 true Chr04: 50676984-50681823 Glycine max
Glyma.04G238200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 50679824-50681823 Glycine max
Glyma.04G238200 2.0kb downstream 2.0kb downstream 4840 true Chr04: 50674984-50679823 Glycine max
Glyma.04G238200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 50674984-50676983 Glycine max
Glyma.04G238200 5.0kb upstream 5.0kb upstream 7840 true Chr04: 50676984-50684823 Glycine max
Glyma.04G238200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 50679824-50684823 Glycine max
Glyma.04G238200 5.0kb downstream 5.0kb downstream 7840 true Chr04: 50671984-50679823 Glycine max
Glyma.04G238200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 50671984-50676983 Glycine max
Glyma.04G238200 10.0kb upstream 10.0kb upstream 12840 true Chr04: 50676984-50689823 Glycine max
Glyma.04G238200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 50679824-50689823 Glycine max
Glyma.04G238200 10.0kb downstream 10.0kb downstream 12840 true Chr04: 50666984-50679823 Glycine max
Glyma.04G238200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 50666984-50676983 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.03928 0.0 9.56433   High
cufflinks 0.0906557 0.0 0.361236 Low  
cufflinks 0.373971 0.0 1.4046    
cufflinks 0.120818 0.0 0.476146 Low  
cufflinks 0.291544 0.0 1.11054    
cufflinks 0.0509868 0.0 0.208461 Low  
cufflinks 4.15378 0.0 12.5393   High
cufflinks 0.104591 0.0 0.41445 Low  
cufflinks 0.0134881 0.0 0.0610068 Low Low
cufflinks 0.043     Low  
cufflinks 0.067        
cufflinks 0.393       High
cufflinks 0.03     Low  
cufflinks 0.122        
cufflinks 0.039     Low  
cufflinks 0.287       High
cufflinks 0.017     Low Low
cufflinks 0.232        
cufflinks 0.1     Low  
cufflinks 0.169        
cufflinks 0.038     Low  
cufflinks 0.202        
cufflinks 0.14        
cufflinks 0.007     Low Low
cufflinks 0.305       High
cufflinks 0.02     Low Low

0 Strain