Gene : Glyma.04G235800 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2358
Name:  ? Glyma.04G235800 Secondary Identifier:  ? PAC:30489518
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G235800 0.5kb upstream 0.5kb upstream 3403 true Chr04: 50380939-50384341 Glycine max
Glyma.04G235800 0.5kb upstream 0.5kb upstream 500 false Chr04: 50383842-50384341 Glycine max
Glyma.04G235800 0.5kb downstream 0.5kb downstream 3403 true Chr04: 50380439-50383841 Glycine max
Glyma.04G235800 0.5kb downstream 0.5kb downstream 500 false Chr04: 50380439-50380938 Glycine max
Glyma.04G235800 1.0kb upstream 1.0kb upstream 3903 true Chr04: 50380939-50384841 Glycine max
Glyma.04G235800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 50383842-50384841 Glycine max
Glyma.04G235800 1.0kb downstream 1.0kb downstream 3903 true Chr04: 50379939-50383841 Glycine max
Glyma.04G235800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 50379939-50380938 Glycine max
Glyma.04G235800 2.0kb upstream 2.0kb upstream 4903 true Chr04: 50380939-50385841 Glycine max
Glyma.04G235800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 50383842-50385841 Glycine max
Glyma.04G235800 2.0kb downstream 2.0kb downstream 4903 true Chr04: 50378939-50383841 Glycine max
Glyma.04G235800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 50378939-50380938 Glycine max
Glyma.04G235800 5.0kb upstream 5.0kb upstream 7903 true Chr04: 50380939-50388841 Glycine max
Glyma.04G235800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 50383842-50388841 Glycine max
Glyma.04G235800 5.0kb downstream 5.0kb downstream 7903 true Chr04: 50375939-50383841 Glycine max
Glyma.04G235800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 50375939-50380938 Glycine max
Glyma.04G235800 10.0kb upstream 10.0kb upstream 12903 true Chr04: 50380939-50393841 Glycine max
Glyma.04G235800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 50383842-50393841 Glycine max
Glyma.04G235800 10.0kb downstream 10.0kb downstream 12903 true Chr04: 50370939-50383841 Glycine max
Glyma.04G235800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 50370939-50380938 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300709 5265 Fabidae View MSA
124060522 5270 Rosid View MSA
123738847 5271 Pentapetalae View MSA
122790244 5272 Eudicot View MSA
122041559 5273 Angiosperm View MSA
121309863 5274 Embryophyte View MSA
123347506 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.459 0.0 42.5722   High
cufflinks 5.62269 0.0 20.1795    
cufflinks 5.49001 0.0 17.0896    
cufflinks 7.0593 0.0 21.3492    
cufflinks 7.58543 0.0 23.3468    
cufflinks 3.90782 0.0 14.9944   Low
cufflinks 9.16524 0.0 28.4572    
cufflinks 8.04872 0.0 24.0987    
cufflinks 7.59839 0.0 22.8359    
cufflinks 2.448       Low
cufflinks 2.438       Low
cufflinks 4.134        
cufflinks 4.418        
cufflinks 5.287        
cufflinks 2.431       Low
cufflinks 7.344     High High
cufflinks 5.552        
cufflinks 3.564        
cufflinks 5.59        
cufflinks 7.354     High High
cufflinks 2.163       Low
cufflinks 6.758        
cufflinks 7.862     High High
cufflinks 2.289       Low
cufflinks 7.247     High High
cufflinks 3.954        

0 Strain