Gene : Glyma.04G235200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12526:SF17 - STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  2352
Name:  ? Glyma.04G235200 Secondary Identifier:  ? PAC:30488415
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYCOGENSYNTH-PWY Glycine max pathologic  
Gmax PWY-622 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G235200 0.5kb upstream 0.5kb upstream 8708 true Chr04: 50343056-50351763 Glycine max
Glyma.04G235200 0.5kb upstream 0.5kb upstream 500 false Chr04: 50351264-50351763 Glycine max
Glyma.04G235200 0.5kb downstream 0.5kb downstream 8708 true Chr04: 50342556-50351263 Glycine max
Glyma.04G235200 0.5kb downstream 0.5kb downstream 500 false Chr04: 50342556-50343055 Glycine max
Glyma.04G235200 1.0kb upstream 1.0kb upstream 9208 true Chr04: 50343056-50352263 Glycine max
Glyma.04G235200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 50351264-50352263 Glycine max
Glyma.04G235200 1.0kb downstream 1.0kb downstream 9208 true Chr04: 50342056-50351263 Glycine max
Glyma.04G235200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 50342056-50343055 Glycine max
Glyma.04G235200 2.0kb upstream 2.0kb upstream 10208 true Chr04: 50343056-50353263 Glycine max
Glyma.04G235200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 50351264-50353263 Glycine max
Glyma.04G235200 2.0kb downstream 2.0kb downstream 10208 true Chr04: 50341056-50351263 Glycine max
Glyma.04G235200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 50341056-50343055 Glycine max
Glyma.04G235200 5.0kb upstream 5.0kb upstream 13208 true Chr04: 50343056-50356263 Glycine max
Glyma.04G235200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 50351264-50356263 Glycine max
Glyma.04G235200 5.0kb downstream 5.0kb downstream 13208 true Chr04: 50338056-50351263 Glycine max
Glyma.04G235200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 50338056-50343055 Glycine max
Glyma.04G235200 10.0kb upstream 10.0kb upstream 18208 true Chr04: 50343056-50361263 Glycine max
Glyma.04G235200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 50351264-50361263 Glycine max
Glyma.04G235200 10.0kb downstream 10.0kb downstream 18208 true Chr04: 50333056-50351263 Glycine max
Glyma.04G235200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 50333056-50343055 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302425 5265 Fabidae View MSA
124060940 5270 Rosid View MSA
123737274 5271 Pentapetalae View MSA
122791286 5272 Eudicot View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.19693 0.0 22.3576    
cufflinks 2.32842 0.0 7.33955    
cufflinks 6.58018 0.0 20.6373    
cufflinks 12.3268 0.0 36.8185   High
cufflinks 2.0262 0.0 6.71201    
cufflinks 0.307696 0.0 1.50807   Low
cufflinks 6.5974 0.0 20.8771    
cufflinks 8.14464 0.0 24.9388    
cufflinks 2.23748 0.0 7.1982    
cufflinks 1.077        
cufflinks 0.112       Low
cufflinks 2.059       High
cufflinks 0.278        
cufflinks 0.316        
cufflinks 0.607        
cufflinks 0.966        
cufflinks 0.408        
cufflinks 4.992       High
cufflinks 0.467        
cufflinks 1.299        
cufflinks 0.288        
cufflinks 1.46        
cufflinks 0.781        
cufflinks 0.147       Low
cufflinks 1.153        
cufflinks 0.174       Low

0 Strain