Gene : Glyma.04G240400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11679:SF3 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 Genomic Order:  2404
Name:  ? Glyma.04G240400 Secondary Identifier:  ? PAC:30487864
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G240400 0.5kb upstream 0.5kb upstream 8086 true Chr04: 50873113-50881198 Glycine max
Glyma.04G240400 0.5kb upstream 0.5kb upstream 500 false Chr04: 50880699-50881198 Glycine max
Glyma.04G240400 0.5kb downstream 0.5kb downstream 8086 true Chr04: 50872613-50880698 Glycine max
Glyma.04G240400 0.5kb downstream 0.5kb downstream 500 false Chr04: 50872613-50873112 Glycine max
Glyma.04G240400 1.0kb upstream 1.0kb upstream 8586 true Chr04: 50873113-50881698 Glycine max
Glyma.04G240400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 50880699-50881698 Glycine max
Glyma.04G240400 1.0kb downstream 1.0kb downstream 8586 true Chr04: 50872113-50880698 Glycine max
Glyma.04G240400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 50872113-50873112 Glycine max
Glyma.04G240400 2.0kb upstream 2.0kb upstream 9586 true Chr04: 50873113-50882698 Glycine max
Glyma.04G240400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 50880699-50882698 Glycine max
Glyma.04G240400 2.0kb downstream 2.0kb downstream 9586 true Chr04: 50871113-50880698 Glycine max
Glyma.04G240400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 50871113-50873112 Glycine max
Glyma.04G240400 5.0kb upstream 5.0kb upstream 12586 true Chr04: 50873113-50885698 Glycine max
Glyma.04G240400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 50880699-50885698 Glycine max
Glyma.04G240400 5.0kb downstream 5.0kb downstream 12586 true Chr04: 50868113-50880698 Glycine max
Glyma.04G240400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 50868113-50873112 Glycine max
Glyma.04G240400 10.0kb upstream 10.0kb upstream 17586 true Chr04: 50873113-50890698 Glycine max
Glyma.04G240400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 50880699-50890698 Glycine max
Glyma.04G240400 10.0kb downstream 10.0kb downstream 17586 true Chr04: 50863113-50880698 Glycine max
Glyma.04G240400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 50863113-50873112 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308424 5265 Fabidae View MSA
124069104 5270 Rosid View MSA
123737015 5271 Pentapetalae View MSA
122795036 5272 Eudicot View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.10279 0.0 14.2075    
cufflinks 4.41723 0.0 12.4724    
cufflinks 6.17064 0.0 16.8781    
cufflinks 5.2355 0.0 14.5263    
cufflinks 5.27717 0.0 14.6636    
cufflinks 7.31726 0.0 19.8364   High
cufflinks 4.14668 0.0 11.8319   Low
cufflinks 5.90615 0.0 16.2289    
cufflinks 4.29033 0.0 12.1546   Low
cufflinks 2.456        
cufflinks 0.909       Low
cufflinks 2.208        
cufflinks 2.564       High
cufflinks 2.983       High
cufflinks 0.829       Low
cufflinks 1.919        
cufflinks 1.257        
cufflinks 2.509        
cufflinks 2.59       High
cufflinks 1.61        
cufflinks 1.027       Low
cufflinks 1.985        
cufflinks 1.903        
cufflinks 1.419        
cufflinks 1.734        
cufflinks 1.586        

0 Strain