Gene : Glyma.04G003400 G. max Wm82.a2.v1
Defline:  (1 of 57) PF00106 - short chain dehydrogenase (adh_short) Genomic Order:  34
Name:  ? Glyma.04G003400 Secondary Identifier:  ? PAC:30489713
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G003400 0.5kb upstream 0.5kb upstream 1685 true Chr04: 283642-285326 Glycine max
Glyma.04G003400 0.5kb upstream 0.5kb upstream 500 false Chr04: 283642-284141 Glycine max
Glyma.04G003400 0.5kb downstream 0.5kb downstream 1685 true Chr04: 284142-285826 Glycine max
Glyma.04G003400 0.5kb downstream 0.5kb downstream 500 false Chr04: 285327-285826 Glycine max
Glyma.04G003400 1.0kb upstream 1.0kb upstream 2185 true Chr04: 283142-285326 Glycine max
Glyma.04G003400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 283142-284141 Glycine max
Glyma.04G003400 1.0kb downstream 1.0kb downstream 2185 true Chr04: 284142-286326 Glycine max
Glyma.04G003400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 285327-286326 Glycine max
Glyma.04G003400 2.0kb upstream 2.0kb upstream 3185 true Chr04: 282142-285326 Glycine max
Glyma.04G003400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 282142-284141 Glycine max
Glyma.04G003400 2.0kb downstream 2.0kb downstream 3185 true Chr04: 284142-287326 Glycine max
Glyma.04G003400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 285327-287326 Glycine max
Glyma.04G003400 5.0kb upstream 5.0kb upstream 6185 true Chr04: 279142-285326 Glycine max
Glyma.04G003400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 279142-284141 Glycine max
Glyma.04G003400 5.0kb downstream 5.0kb downstream 6185 true Chr04: 284142-290326 Glycine max
Glyma.04G003400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 285327-290326 Glycine max
Glyma.04G003400 10.0kb upstream 10.0kb upstream 11185 true Chr04: 274142-285326 Glycine max
Glyma.04G003400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 274142-284141 Glycine max
Glyma.04G003400 10.0kb downstream 10.0kb downstream 11185 true Chr04: 284142-295326 Glycine max
Glyma.04G003400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 285327-295326 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298091 5265 Fabidae View MSA
124038625 5270 Rosid View MSA
123752775 5271 Pentapetalae View MSA
122774777 5272 Eudicot View MSA
122050882 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121351668 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.628557 0.0 2.35408    
cufflinks 0.0827757 0.0 0.337706 Low Low
cufflinks 5.31801 0.0 16.5217   High
cufflinks 0.125289 0.0 0.501621 Low  
cufflinks 0.428142 0.0 1.62807    
cufflinks 1.01676 0.0 3.71409    
cufflinks 0.0520038 0.0 0.217147 Low Low
cufflinks 0.233698 0.0 0.915498    
cufflinks 0.841574 0.0 3.10907    
cufflinks 0.012     Low Low
cufflinks 0.017     Low Low
cufflinks 0.177       High
cufflinks 0.191       High
cufflinks 0.082        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.072     Low  
cufflinks 0.021     Low  
cufflinks 0.038     Low  
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.084     Low  
cufflinks 0.02     Low  

0 Strain