Gene : Glyma.04G202200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  2022
Name:  ? Glyma.04G202200 Secondary Identifier:  ? PAC:30489188
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5980 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G202200 0.5kb upstream 0.5kb upstream 5317 true Chr04: 47501500-47506816 Glycine max
Glyma.04G202200 0.5kb upstream 0.5kb upstream 500 false Chr04: 47501500-47501999 Glycine max
Glyma.04G202200 0.5kb downstream 0.5kb downstream 5317 true Chr04: 47502000-47507316 Glycine max
Glyma.04G202200 0.5kb downstream 0.5kb downstream 500 false Chr04: 47506817-47507316 Glycine max
Glyma.04G202200 1.0kb upstream 1.0kb upstream 5817 true Chr04: 47501000-47506816 Glycine max
Glyma.04G202200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47501000-47501999 Glycine max
Glyma.04G202200 1.0kb downstream 1.0kb downstream 5817 true Chr04: 47502000-47507816 Glycine max
Glyma.04G202200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47506817-47507816 Glycine max
Glyma.04G202200 2.0kb upstream 2.0kb upstream 6817 true Chr04: 47500000-47506816 Glycine max
Glyma.04G202200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47500000-47501999 Glycine max
Glyma.04G202200 2.0kb downstream 2.0kb downstream 6817 true Chr04: 47502000-47508816 Glycine max
Glyma.04G202200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47506817-47508816 Glycine max
Glyma.04G202200 5.0kb upstream 5.0kb upstream 9817 true Chr04: 47497000-47506816 Glycine max
Glyma.04G202200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47497000-47501999 Glycine max
Glyma.04G202200 5.0kb downstream 5.0kb downstream 9817 true Chr04: 47502000-47511816 Glycine max
Glyma.04G202200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47506817-47511816 Glycine max
Glyma.04G202200 10.0kb upstream 10.0kb upstream 14817 true Chr04: 47492000-47506816 Glycine max
Glyma.04G202200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47492000-47501999 Glycine max
Glyma.04G202200 10.0kb downstream 10.0kb downstream 14817 true Chr04: 47502000-47516816 Glycine max
Glyma.04G202200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47506817-47516816 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301284 5265 Fabidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.58139 0.0 18.3324   Low
cufflinks 6.43325 0.0 17.9534   Low
cufflinks 8.89699 0.0 24.1689    
cufflinks 37.3376 0.0 103.309 High High
cufflinks 14.0532 0.0 37.5475    
cufflinks 16.9263 0.0 45.1596    
cufflinks 7.67592 0.0 21.0906    
cufflinks 33.942 0.0 93.2315 High High
cufflinks 12.0951 0.0 32.4151    
cufflinks 7.162       High
cufflinks 1.916       Low
cufflinks 4.768        
cufflinks 6.232       High
cufflinks 4.168        
cufflinks 1.437       Low
cufflinks 2.87        
cufflinks 3.355        
cufflinks 5.296       High
cufflinks 3.428        
cufflinks 2.914        
cufflinks 2.642        
cufflinks 2.991        
cufflinks 2.083       Low
cufflinks 2.916        
cufflinks 2.864        
cufflinks 2.594        

0 Strain