Gene : Glyma.19G175600 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12181:SF12 - PROTEIN LPIN-1 Genomic Order:  1756
Name:  ? Glyma.19G175600 Secondary Identifier:  ? PAC:30513543
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G175600 0.5kb upstream 0.5kb upstream 7712 true Chr19: 43561808-43569519 Glycine max
Glyma.19G175600 0.5kb upstream 0.5kb upstream 500 false Chr19: 43569020-43569519 Glycine max
Glyma.19G175600 0.5kb downstream 0.5kb downstream 7712 true Chr19: 43561308-43569019 Glycine max
Glyma.19G175600 0.5kb downstream 0.5kb downstream 500 false Chr19: 43561308-43561807 Glycine max
Glyma.19G175600 1.0kb upstream 1.0kb upstream 8212 true Chr19: 43561808-43570019 Glycine max
Glyma.19G175600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43569020-43570019 Glycine max
Glyma.19G175600 1.0kb downstream 1.0kb downstream 8212 true Chr19: 43560808-43569019 Glycine max
Glyma.19G175600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43560808-43561807 Glycine max
Glyma.19G175600 2.0kb upstream 2.0kb upstream 9212 true Chr19: 43561808-43571019 Glycine max
Glyma.19G175600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43569020-43571019 Glycine max
Glyma.19G175600 2.0kb downstream 2.0kb downstream 9212 true Chr19: 43559808-43569019 Glycine max
Glyma.19G175600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43559808-43561807 Glycine max
Glyma.19G175600 5.0kb upstream 5.0kb upstream 12212 true Chr19: 43561808-43574019 Glycine max
Glyma.19G175600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43569020-43574019 Glycine max
Glyma.19G175600 5.0kb downstream 5.0kb downstream 12212 true Chr19: 43556808-43569019 Glycine max
Glyma.19G175600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43556808-43561807 Glycine max
Glyma.19G175600 10.0kb upstream 10.0kb upstream 17212 true Chr19: 43561808-43579019 Glycine max
Glyma.19G175600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43569020-43579019 Glycine max
Glyma.19G175600 10.0kb downstream 10.0kb downstream 17212 true Chr19: 43551808-43569019 Glycine max
Glyma.19G175600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43551808-43561807 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311900 5265 Fabidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.25301 0.0 21.9109    
cufflinks 2.33418 0.0 11.1495    
cufflinks 10.8674 0.0 45.7885   High
cufflinks 1.54526 0.0 8.82819    
cufflinks 1.16088 0.0 6.50251    
cufflinks 2.98252 0.0 13.4209    
cufflinks 1.46766 0.0 8.3262    
cufflinks 1.19874 0.0 5.39462    
cufflinks 2.07083 0.0 7.77711    
cufflinks 0.215       Low
cufflinks 0.967        
cufflinks 1.264       High
cufflinks 0.208       Low
cufflinks 0.139       Low
cufflinks 0.287        
cufflinks 0.767        
cufflinks 0.329        
cufflinks 0.665        
cufflinks 0.467        
cufflinks 1.125       High
cufflinks 0.544        
cufflinks 0.873        
cufflinks 0.663        
cufflinks 1.311       High
cufflinks 0.836        
cufflinks 0.595        

0 Strain