Gene : Glyma.19G177700 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1777
Name:  ? Glyma.19G177700 Secondary Identifier:  ? PAC:30512878
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G177700 0.5kb upstream 0.5kb upstream 8377 true Chr19: 43697819-43706195 Glycine max
Glyma.19G177700 0.5kb upstream 0.5kb upstream 500 false Chr19: 43705696-43706195 Glycine max
Glyma.19G177700 0.5kb downstream 0.5kb downstream 8377 true Chr19: 43697319-43705695 Glycine max
Glyma.19G177700 0.5kb downstream 0.5kb downstream 500 false Chr19: 43697319-43697818 Glycine max
Glyma.19G177700 1.0kb upstream 1.0kb upstream 8877 true Chr19: 43697819-43706695 Glycine max
Glyma.19G177700 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43705696-43706695 Glycine max
Glyma.19G177700 1.0kb downstream 1.0kb downstream 8877 true Chr19: 43696819-43705695 Glycine max
Glyma.19G177700 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43696819-43697818 Glycine max
Glyma.19G177700 2.0kb upstream 2.0kb upstream 9877 true Chr19: 43697819-43707695 Glycine max
Glyma.19G177700 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43705696-43707695 Glycine max
Glyma.19G177700 2.0kb downstream 2.0kb downstream 9877 true Chr19: 43695819-43705695 Glycine max
Glyma.19G177700 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43695819-43697818 Glycine max
Glyma.19G177700 5.0kb upstream 5.0kb upstream 12877 true Chr19: 43697819-43710695 Glycine max
Glyma.19G177700 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43705696-43710695 Glycine max
Glyma.19G177700 5.0kb downstream 5.0kb downstream 12877 true Chr19: 43692819-43705695 Glycine max
Glyma.19G177700 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43692819-43697818 Glycine max
Glyma.19G177700 10.0kb upstream 10.0kb upstream 17877 true Chr19: 43697819-43715695 Glycine max
Glyma.19G177700 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43705696-43715695 Glycine max
Glyma.19G177700 10.0kb downstream 10.0kb downstream 17877 true Chr19: 43687819-43705695 Glycine max
Glyma.19G177700 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43687819-43697818 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302518 5265 Fabidae View MSA
124068015 5270 Rosid View MSA
123738487 5271 Pentapetalae View MSA
122789712 5272 Eudicot View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.3777 0.0 57.4401   High
cufflinks 6.16245 0.0 27.7595    
cufflinks 2.37201 0.0 13.4305    
cufflinks 2.50152 0.0 13.123    
cufflinks 0.768726 0.0 5.29369   Low
cufflinks 0.50209 0.0 2.2324   Low
cufflinks 2.49031 0.0 13.3589    
cufflinks 3.02648 0.0 16.0368    
cufflinks 1.0422 0.0 5.83399    
cufflinks 0.139        
cufflinks 0.026     Low Low
cufflinks 0.259        
cufflinks 0.048     Low  
cufflinks 0.037     Low  
cufflinks 0.09        
cufflinks 1.901       High
cufflinks 0.026     Low Low
cufflinks 0.388        
cufflinks 0.669        
cufflinks 2.737       High
cufflinks 0.035     Low  
cufflinks 2.428       High
cufflinks 1.505       High
cufflinks 0.043     Low  
cufflinks 2.346       High
cufflinks 0.025     Low Low

0 Strain