Gene : Glyma.04G221000 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2210
Name:  ? Glyma.04G221000 Secondary Identifier:  ? PAC:30490902
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G221000 0.5kb upstream 0.5kb upstream 4739 true Chr04: 49186939-49191677 Glycine max
Glyma.04G221000 0.5kb upstream 0.5kb upstream 500 false Chr04: 49191178-49191677 Glycine max
Glyma.04G221000 0.5kb downstream 0.5kb downstream 4739 true Chr04: 49186439-49191177 Glycine max
Glyma.04G221000 0.5kb downstream 0.5kb downstream 500 false Chr04: 49186439-49186938 Glycine max
Glyma.04G221000 1.0kb upstream 1.0kb upstream 5239 true Chr04: 49186939-49192177 Glycine max
Glyma.04G221000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 49191178-49192177 Glycine max
Glyma.04G221000 1.0kb downstream 1.0kb downstream 5239 true Chr04: 49185939-49191177 Glycine max
Glyma.04G221000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 49185939-49186938 Glycine max
Glyma.04G221000 2.0kb upstream 2.0kb upstream 6239 true Chr04: 49186939-49193177 Glycine max
Glyma.04G221000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 49191178-49193177 Glycine max
Glyma.04G221000 2.0kb downstream 2.0kb downstream 6239 true Chr04: 49184939-49191177 Glycine max
Glyma.04G221000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 49184939-49186938 Glycine max
Glyma.04G221000 5.0kb upstream 5.0kb upstream 9239 true Chr04: 49186939-49196177 Glycine max
Glyma.04G221000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 49191178-49196177 Glycine max
Glyma.04G221000 5.0kb downstream 5.0kb downstream 9239 true Chr04: 49181939-49191177 Glycine max
Glyma.04G221000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 49181939-49186938 Glycine max
Glyma.04G221000 10.0kb upstream 10.0kb upstream 14239 true Chr04: 49186939-49201177 Glycine max
Glyma.04G221000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 49191178-49201177 Glycine max
Glyma.04G221000 10.0kb downstream 10.0kb downstream 14239 true Chr04: 49176939-49191177 Glycine max
Glyma.04G221000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 49176939-49186938 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040975 5273 Angiosperm View MSA
122315321 5265 Fabidae View MSA
124067811 5270 Rosid View MSA
123746701 5271 Pentapetalae View MSA
122790264 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.85534 0.0 5.90504    
cufflinks 1.97654 0.0 6.22253    
cufflinks 0.924084 0.0 3.18269   Low
cufflinks 1.55579 0.0 5.06073    
cufflinks 1.57967 0.0 5.15505    
cufflinks 2.05766 0.0 6.44289    
cufflinks 1.57543 0.0 5.13668    
cufflinks 1.69746 0.0 5.46675    
cufflinks 1.75587 0.0 5.6248    
cufflinks 0.918        
cufflinks 0.305       Low
cufflinks 1.265        
cufflinks 1.365        
cufflinks 1.775       High
cufflinks 0.755        
cufflinks 0.936        
cufflinks 1.238        
cufflinks 1.75       High
cufflinks 1.685       High
cufflinks 0.816        
cufflinks 0.292       Low
cufflinks 0.827        
cufflinks 0.998        
cufflinks 0.335       Low
cufflinks 0.905        
cufflinks 0.59        

0 Strain