Gene : Glyma.19G178500 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11064:SF27 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED Genomic Order:  1785
Name:  ? Glyma.19G178500 Secondary Identifier:  ? PAC:30514400
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G178500 0.5kb upstream 0.5kb upstream 1646 true Chr19: 43772068-43773713 Glycine max
Glyma.19G178500 0.5kb upstream 0.5kb upstream 500 false Chr19: 43772068-43772567 Glycine max
Glyma.19G178500 0.5kb downstream 0.5kb downstream 1646 true Chr19: 43772568-43774213 Glycine max
Glyma.19G178500 0.5kb downstream 0.5kb downstream 500 false Chr19: 43773714-43774213 Glycine max
Glyma.19G178500 1.0kb upstream 1.0kb upstream 2146 true Chr19: 43771568-43773713 Glycine max
Glyma.19G178500 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43771568-43772567 Glycine max
Glyma.19G178500 1.0kb downstream 1.0kb downstream 2146 true Chr19: 43772568-43774713 Glycine max
Glyma.19G178500 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43773714-43774713 Glycine max
Glyma.19G178500 2.0kb upstream 2.0kb upstream 3146 true Chr19: 43770568-43773713 Glycine max
Glyma.19G178500 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43770568-43772567 Glycine max
Glyma.19G178500 2.0kb downstream 2.0kb downstream 3146 true Chr19: 43772568-43775713 Glycine max
Glyma.19G178500 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43773714-43775713 Glycine max
Glyma.19G178500 5.0kb upstream 5.0kb upstream 6146 true Chr19: 43767568-43773713 Glycine max
Glyma.19G178500 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43767568-43772567 Glycine max
Glyma.19G178500 5.0kb downstream 5.0kb downstream 6146 true Chr19: 43772568-43778713 Glycine max
Glyma.19G178500 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43773714-43778713 Glycine max
Glyma.19G178500 10.0kb upstream 10.0kb upstream 11146 true Chr19: 43762568-43773713 Glycine max
Glyma.19G178500 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43762568-43772567 Glycine max
Glyma.19G178500 10.0kb downstream 10.0kb downstream 11146 true Chr19: 43772568-43783713 Glycine max
Glyma.19G178500 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43773714-43783713 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247582 5265 Fabidae Singleton cluster - no MSA
124066236 5270 Rosid View MSA
123751737 5271 Pentapetalae View MSA
122797656 5272 Eudicot View MSA
122048596 5273 Angiosperm View MSA
123429094 5275 Viridiplantae View MSA
121350139 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.16292 0.0 21.3846   Low
cufflinks 9.71818 0.0 32.0739    
cufflinks 13.3383 0.0 42.3093   High
cufflinks 8.9613 0.0 29.8906    
cufflinks 9.60236 0.0 31.4208    
cufflinks 14.0631 0.0 43.8834   High
cufflinks 8.92155 0.0 29.6598    
cufflinks 8.9184 0.0 29.7479    
cufflinks 11.2068 0.0 36.1366    
cufflinks 6.391        
cufflinks 3.878        
cufflinks 6.924        
cufflinks 4.99        
cufflinks 4.11        
cufflinks 3.519       Low
cufflinks 5.471        
cufflinks 3.381       Low
cufflinks 10.143     High High
cufflinks 7.124       High
cufflinks 4.725        
cufflinks 4.703        
cufflinks 4.606        
cufflinks 9.007     High High
cufflinks 4.157        
cufflinks 4.199        
cufflinks 4.039        

0 Strain